New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1332949	42 (0.640)	3 (0.050)	3/222	NT	6.9%	intergenic (+159/+63)	hfq/bsaA	host factor‑I protein Hfq/glutathione peroxidase
	?	CP000730	= 1332971	45 (0.800)					intergenic (+181/+41)	hfq/bsaA	host factor‑I protein Hfq/glutathione peroxidase

ATTTAATGACTCGTGTACATAACGTTTGAAGTATGATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGT‑TCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAGGTGCAAATCGTTTAACAACGTTACCTTC  >  CP000730/1332811‑1333089                                                                                                                                            |                                                                                                                                             aTTTAATGACTCGTGTACATAACGTTTGAAGTATGATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGT‑TCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGt                                                                                                                                            <  1:563157/141‑1 (MQ=255)     aaTGACTCGTGTACATAACGTTTGAAGTATGATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGT‑TCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGat                                                                                                                                        <  1:744392/141‑2 (MQ=255)         aCTCGTGTACATAACGTTTGAAGTATGATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGT‑TCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCaa                                                                                                                                    <  1:44132/141‑1 (MQ=255)         aCTCGTGTACATAACGTTTGAAGTATGATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGT‑TCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCaa                                                                                                                                    <  1:153425/141‑1 (MQ=255)         aCTCGTGTACATAACGTTTGAAGTATGATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGT‑TCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCaa                                                                                                                                    >  2:597409/1‑141 (MQ=255)         aCTCGTGTACATAACGTTTGAAGTATGATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGT‑TCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCaa                                                                                                                                    <  1:36350/141‑1 (MQ=255)             gtgtACATAACGTTTGAAGTATGATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGT‑TCAAATGACAAGATACAATAGAGGACTGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAatata                                                                                                                                >  1:301415/1‑141 (MQ=255)                tACAAAACGTTTGAAGTATGATAAAGAGATATAGAAATAAAGTCATGTGTGACATCAATTAAATGATGT‑TCAAATGACAAGATACAATAGAAGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGa                                                                                                                             <  2:434168/141‑1 (MQ=255)                     aaCGTTTGAAGTATGATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGT‑TCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGa                                                                                                                        <  2:659209/141‑1 (MQ=255)                      aCGTTTGAAGTATGATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGT‑TCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAAGTCGAGTCAATATATGATACGAc                                                                                                                       <  2:12015‑M2/141‑2 (MQ=255)                       cGTTTGAAGTATGATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGT‑TCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGtcgtatcatatattgactcgacct                                                                                                                      <  2:344035‑M1/141‑25 (MQ=255)                       cGTTTGAAGTATGATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGT‑TCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGAct                                                                                                                      >  2:84926‑M2/1‑139 (MQ=255)                          ttGAAGTATGATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGT‑TCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActt                                                                                                                     >  2:189892‑M2/1‑136 (MQ=255)                          ttGAAGTATGATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGT‑TCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActt                                                                                                                     <  1:189892‑M2/139‑4 (MQ=255)                           tGAAGTATGATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGT‑TCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttat                                                                                                                  <  1:486330‑M2/141‑7 (MQ=255)                             aaGTATGATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGT‑TCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatat                                                                                                                <  1:748990‑M2/141‑9 (MQ=255)                             aaGTACGATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGT‑TCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatat                                                                                                                <  1:121799‑M2/141‑9 (MQ=255)                              aGTATGATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGT‑TCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatg                                                                                                               <  2:740620‑M2/141‑10 (MQ=255)                              aGTATGATAAATAGATATAGAAACAAAGACATATGTGATATCAATTAAATGATGT‑TCAAATGACAAGATACAAGAGAGGTATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGCcattatatt                                                                                                               <  1:157057‑M2/141‑10 (MQ=255)                              aGTAGGAGAAATAGAGATAGAAATAAAGTCATATGTGACATCAATTAAATGATGT‑TCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGAatttatatg                                                                                                               <  2:740793‑M2/141‑10 (MQ=255)                                tATGATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGT‑TCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaa                                                                                                             >  1:648043‑M2/1‑130 (MQ=255)                                  tGATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGT‑TCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaagc                                                                                                           >  2:497199‑M2/1‑128 (MQ=255)                                      aaaTAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGT‑TCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaagcgttt                                                                                                       <  2:639715‑M2/141‑18 (MQ=255)                                         tAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGT‑TCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTAt                                                                                                    <  1:250348/141‑1 (MQ=255)                                              ataGAAATAAAGTCATATGTGACATCAATTAAATGATGT‑TCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCt                                                                                               <  2:773019/141‑1 (MQ=255)                                                   aaTAAAGTCATATGTGACATCAATTAAATGATGT‑TCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAg                                                                                          >  2:770140/1‑141 (MQ=255)                                                     tAAAGTCATATGTGACATCAATTAAATGATGT‑TCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCt                                                                                        >  2:719571/1‑141 (MQ=255)                                                       aaGTCATATGTGACATCAATTAAATGATGT‑TCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAg                                                                                      >  2:86124/1‑141 (MQ=255)                                                               tgtgACATCAATTAAATGATGT‑TCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATAtttt                                                                              <  1:456080/141‑1 (MQ=255)                                                               tgtgACATCAATTAAATGATGT‑TCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATAtttt                                                                              <  1:591263/141‑1 (MQ=255)                                                                tgaaCATCATTTAATTGATGTCACATATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATAtttt                                                                              >  2:494218/4‑141 (MQ=255)                                                                  gACATCAATTAAATGATGT‑TCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTtata                                                                           <  1:770140/141‑1 (MQ=255)                                                                       cAATTAAATGATGT‑TCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATaataat                                                                      >  1:383043/1‑141 (MQ=255)                                                                           tAAATGATGT‑TCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAAttttt                                                                  <  1:60969/141‑1 (MQ=255)                                                                            aaaTGATGT‑TCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTc                                                                 >  2:421764/1‑141 (MQ=255)                                                                                aatgT‑TCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTAtt                                                             <  2:189817/140‑1 (MQ=255)                                                                                         aaTGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATACTTTTTCTATTTCTCTTTc                                                     >  1:402806/1‑141 (MQ=255)                                                                                           tGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGa                                                   <  1:678508/141‑1 (MQ=255)                                                                                             aCAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGtcgtatcatatattgactc                                                                                                                           <  2:101508‑M1/67‑20 (MQ=255)                                                                                             aCAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGtcgtatcatatattgactc                                                                                                                           >  1:101508‑M1/1‑48 (MQ=255)                                                                                              cAAGATACAATAGAGGAATGATTGTAATAAAAACGCTTCATATAAAGATCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGAttt                                                >  2:322728/1‑141 (MQ=255)                                                                                                   tACAATAGAGTAATGTTTGTAAGAAATGCGGTTCATATAAAGGTCGAGTCAATCTATGGTACGGCTTTATATGACGCGTTTTATTTGCTATGTGCTAGTATATTTTATAATGATTTTTCTATGTCTCTTTCGATTTGAACa                                           <  2:365237/141‑1 (MQ=255)                                                                                                    aCAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAg                                          <  1:740620/141‑1 (MQ=255)                                                                                                     cAATAGTGGAATGTTTGTAATAAAGACGCTGCATATAAAGGTCGAGTCAATATATGATACTTCTTTGTATGAAGCGATTTATTTGCTATGACCTAGTATACTTTATAATAAATACTCTATTTTTATTTCGATTTGAACAgg                                         >  2:324407/1‑141 (MQ=255)                                                                                                       aTAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGtt                                       <  1:433492/141‑1 (MQ=255)                                                                                                                    tGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAGGTGc                          <  1:164762/141‑1 (MQ=255)                                                                                                                      taataaAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAGGTGCaa                        <  2:696110/141‑1 (MQ=255)                                                                                                                      taataaAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAGGTGCaa                        >  1:521662/1‑141 (MQ=255)                                                                                                                       aataaAGACGCTTCATATAAAGGTCGAGTAAATATATGATACGCCTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTTAGGTGCaaa                       <  1:369610/141‑1 (MQ=255)                                                                                                                       aataaAAACCCTTTATATTAAGGTCGAGTCAATATATGATCCGACTTTATATGAAGCGTTTTATTTTCTATCAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTTAGGTGCaaa                       <  1:369537/141‑1 (MQ=255)                                                                                                                        ataaAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAGGTGCAAAt                      <  2:478549/141‑1 (MQ=255)                                                                                                                        ataaAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAGGTGCAAAt                      <  2:478662/141‑1 (MQ=255)                                                                                                                          aaaaaCGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAGGTGCAAATCg                    >  1:212270/1‑141 (MQ=255)                                                                                                                            aaaCGCTTCATATAAAGtcgtatcatatattgactcgacctttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcatttaattgatgtcacatatgactttatttctatatctattt                  <  2:639715‑M1/141‑125 (MQ=255)                                                                                                                            aaaCGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAGGTGTAAATCGtt                  >  2:760361/1‑141 (MQ=255)                                                                                                                                gCTTCATATAAAGtcgtatcatatattgactcgacctttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcatttaattgatgtcacatatgactttatttctatatctatttatca              >  2:497199‑M1/1‑13 (MQ=255)                                                                                                                                gCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAGGTGCAAATCGTTTaaa              >  1:527540/1‑140 (MQ=255)                                                                                                                                 cTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAGGTGCAAATCGTTTaaca             >  1:66708/1‑141 (MQ=255)                                                                                                                                  ttCATATAAAGtcgtatcatatattgactcgacctttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcatttaattgatgtcacatatgactttatttctatatctatttatcata            >  1:648043‑M1/1‑11 (MQ=255)                                                                                                                                  ttCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAGGTTCAAATCGTTTaacaa            >  2:3357/1‑141 (MQ=255)                                                                                                                                  ttCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAGGTGCAAATCGTTTaacaa            >  2:94594/1‑141 (MQ=255)                                                                                                                                  ttCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAGGTGCAAATCGTTTaacaa            >  1:219360/1‑141 (MQ=255)                                                                                                                                    cATATAAATtcgtatcatatattgactcgacctttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcatttaattgatgtcacatatgactttatttctatctctatttctcctact          <  2:740793‑M1/141‑133 (MQ=255)                                                                                                                                    cATATAAAGtcgtatcatatattgactcgacctttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcatttaattgatgtcacatatgactttatttctatatctatttatcatact          <  2:740620‑M1/141‑133 (MQ=255)                                                                                                                                    aatataATGgcgtatcatatattgactcgacctttatatgaagcgtttttattacaaacatacctctcttgtatcttgtcatttgaacatcatttaattgatatcacatatgtctttgtttctatatctatttatcatact          <  1:157057‑M1/140‑133 (MQ=255)                                                                                                                                     atatAAAGtcgtatcatatattgactcgacctttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcatttaattgatgtcacatatgactttatttctatatctatttatcgtactt         <  1:121799‑M1/141‑134 (MQ=255)                                                                                                                                     atatAAAGtcgtatcatatattgactcgacctttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcatttaattgatgtcacatatgactttatttctatatctatttatcatactt         <  1:748990‑M1/141‑134 (MQ=255)                                                                                                                                     atatAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTTTTTTTCTTTTCGTTTAACAACGt         >  2:344759/1‑141 (MQ=255)                                                                                                                                       gtaAAGGTCGAGTCGATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTAGAATAGTTTTTCTATTTCTCTTTCGATTTGACCAGGTTTTTTTTGAGGTGCAAATCGTTTAACAACGTTa       <  2:691249/140‑1 (MQ=255)                                                                                                                                       ataAAGtcgtatcatatattgactcgacctttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcatttaattgatgtcacatatgactttatttctatatctatttatcatacttca       <  1:486330‑M1/141‑136 (MQ=255)                                                                                                                                          aaGtcgtatcatatattgactcgacctttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcatttaattgatgtcacatatgactttatttctatatctatttatcatacttcaa      <  1:189892‑M1/139‑137 (MQ=255)                                                                                                                                          aaGtcgtatcatatattgactcgacctttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcatttaattgatgtcacatatgactttatttctatatctatttatcatacttcaa      >  2:189892‑M1/1‑3 (MQ=255)                                                                                                                                           aGtcgtatcatatattgactcgacctttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcatttaattgatgtcacatatgactttatttctatatctatttatcatacttcaaacg   >  2:84926‑M1/1‑2 (MQ=255)                                                                                                                                           aGGTCGAGTCAATATATGATACGActttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcatttaattgatgtcacatatgactttatttctatatctatttatcatacttcaaacg   <  2:344035‑M2/141‑118 (MQ=255)                                                                                                                                           aGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAGGTGCAAATCGTTTAACACCGTTACCtt   <  2:405932/141‑1 (MQ=255)                                                                                                                                           aGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAGGTGCAAATCGTTTAACAACGTTACCtt   <  1:764234/141‑1 (MQ=255)                                                                                                                                            gtcgtatcatatattgactcgacttttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcatttaattgatgtcacatatgactttatttctatatctatttatcatacttcaaacgt  <  2:12015‑M1/141‑141 (MQ=255)                                                                                                                                            ggTTGAGTCTATATATGATTCAAGTTTATATGATGAGTTTTATTTGCTATGGGCTCGTATATTTTCTATTAGTGTTGCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTCTGGTGCAATTCGTTTACCATCGTTACCTTc  <  2:157057/141‑1 (MQ=255)                                                                                                                                            |                                                                                                                                             ATTTAATGACTCGTGTACATAACGTTTGAAGTATGATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGT‑TCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAGGTGCAAATCGTTTAACAACGTTACCTTC  >  CP000730/1332811‑1333089

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.