New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1368504 =	65 (1.000)	3 (0.050)	3/236	NT	4.9%	intergenic (+2803/‑1967)	rpmG2/tkt	ribosomal protein L33/transketolase
	?	CP000730	1368533 =	56 (0.940)					intergenic (+2832/‑1938)	rpmG2/tkt	ribosomal protein L33/transketolase
Rejected: Frequency below/above cutoff threshold.

CATGTTTATCTACTTCCTTACAGACAAACATTACCCTTTAATCTCATGCCAAAAACATTAACCAGTATAATTTTCTGTCCAAAAAGGTTGTTTTTCATCATTAAAATCAACACCAACACCTAATATTTTAAACGTATCATTTAAAATATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1368653‑1368504 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttaaaatattAGGTGTTGGTGTTGATTTTAATGATGAAAAACAACCTTTTTGGACAGAAAATTATACTGGTTAATGTTTTTGGCATGAGATTAAAGGGTAATGTTTGTCTGTAAGGAAGTAGATAAACATGATGACAACAGATAAACCA  >  CP000730/1368533‑1368671                                                                                                                                                                                                                                                                                                   CATGTTTATCTACTTCCTTACAGACAAACATTACCCTTTAATCTCATGCCAAAAACATTAACCAGTATAATTTTCTGTCCAAAAAGGTTGTTTTTCATCATTAAAATCAACACCAACACCTAATATTTTAAACGTATCATT                                                                                                                                                      >  2:604932/1‑141      TTATCTACTTCCTTACAGACAAACATTACCCTTTACTCTCATGCCAAAAACATTAACCAGTATAATTTTCTGTCCAAAAAGGTTGTTTTTCATCATTAAAATCAACACCAACACCTAATATTTTAAACGTATCATTTAAAA                                                                                                                                                 >  1:27044/1‑141        ATCTACTTCCTTACAGACAAACATTACCCTTTAATCTCATGCCAAAAACATTAACCAGTATAATTTTCTGTCCAAAAAGGTTGTTTTTCATCATTAAAATCAACACCAACACCTAATATTTTAAACGTATCATTTAAAATA                                                                                                                                               >  2:740191/1‑141         TCTACTTCCTTACAGACAAACATTACCCTTTAATCTCATGCCAAAAACATTAACCAGTATAATTTTCTGTCCAAAAAGGTTGTTTTTCATCATTAAAATCAACACCAACACCTGATATTTTAAACGTATCATTTAAAATAT                                                                                                                                              >  1:775927/1‑141          CTACTTCCTTACAGACAAACATTACCCTTTAATCTCATGCCAAAAACATTAACCAGTATAATTTTCTGTCCAAAAAGGTTGTTTTTCATCATTAAAATCAACACCAACACCTAATATTTTAAACGTATCATTTAAAATATT                                                                                                                                             <  1:36178/141‑1                                                                                                                               TTTAAACGTATCATTTAAAATATTAGGTGTTGGTGTTGATTTTAATGATGAAAAACAACCTTTTTGGACAGAAAATTATACTGGTTAATGTTTTTGGCATGAGATTAAAGGGTAATGTTTGTCTGTAAGGAAGTAGATAAA                        >  2:291062/1‑141                                                                                                                                TTAAACGTATCATTTAAAATATTAGGTGTTGGTGTTGATTTTAATGATGAAAAAC                                                                                                             <  2:117026/55‑1                                                                                                                                TTAAACGTATCATTTAAAATATTAGGTGTTGGTGTTGATTTTAATGATGAAAAAC                                                                                                             >  1:117026/1‑55                                                                                                                                                    ATTAGGTGTTGGTGTTGATTTTAATGATGAAAAACAACCTTTTTGGACAGAAAATTATACTGGTTAATGTTTTTGGCATGAGATTAAAGGGTAATGTTTGTCTGTAAGGAAGTAGATAAACATGATGACAACAGATAAACC   <  1:40737/141‑1                                                                                                                                                     TTAGGTGTTGGTGTTGATTTTAATGATGAAAAACAACCTTTTTGGACAGAAAATTATACTGGTTAATGTTTTTGGCATGAGATTAAAGGGTAATGTTTGTCTGTAAGGAAGTAGATAAACATGATGACAACAGATAAACCA  <  1:229540/141‑1                                                                                                                                                     TTAGGTGTTGGTGTTGATTTTAATGATGAAAAACAACCTTTTTGGACAGAAAATTATACTGGTTAATGTTTTTGGCATGAGATTAAAGGGTAATGTTTGTCTGTAAGGAAGTAGATAAACATGATGACAACAGATAAACCA  >  2:76908/1‑141                                                                                                                                                                                                                                                                                                   CATGTTTATCTACTTCCTTACAGACAAACATTACCCTTTAATCTCATGCCAAAAACATTAACCAGTATAATTTTCTGTCCAAAAAGGTTGTTTTTCATCATTAAAATCAACACCAACACCTAATATTTTAAACGTATCATTTAAAATATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1368653‑1368504 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttaaaatattAGGTGTTGGTGTTGATTTTAATGATGAAAAACAACCTTTTTGGACAGAAAATTATACTGGTTAATGTTTTTGGCATGAGATTAAAGGGTAATGTTTGTCTGTAAGGAAGTAGATAAACATGATGACAACAGATAAACCA  >  CP000730/1368533‑1368671

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.