| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 1695128 | 51 (0.780) | 4 (0.070) | 4/238 | NT | 7.6% | coding (14/129 nt) | USA300HOU_1585 | hypothetical protein |
| ? | CP000730 | = 1695176 | 50 (0.830) | intergenic (‑35/+148) | USA300HOU_1585/lepA | hypothetical protein/GTP‑binding protein LepA | |||||
TGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1694981‑1695128‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggggccccaACACAGAAGCTGACGAAAAGTCAGCTTACTATAATGTGCAAGTTGGGGTGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCAT < CP000730/1695176‑1695038 TGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGG > 2:677454/1‑141TGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGG < 1:683581/141‑1 GTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGG < 1:99998/141‑1 CTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCC < 2:758331/141‑1 CTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCC < 1:61529/141‑1 TTAAAAATAAAATTACATGAGTAAAACTAATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCC < 2:766738/141‑1 GAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCAACACAGAAGCTGACGA < 2:436838/141‑1 AAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACTATAATGTGCAAGTTGGGG < 2:425392/141‑1 TATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACTATAATGTGCAAGTTGGGGTGGGGC < 1:292986/141‑1 ATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCC > 1:316423/1‑73 ATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCC < 2:316423/73‑1 TATTCCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACTATAATGTGCAAGTTGGGGTGGGGCCCCAACATAGAGAAT < 1:331446/141‑1 TGGGGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACTATAATGTGCAAGTTGGGGTGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAA > 2:520972/1‑141 GCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACTATAATGTGCAAGTTGGGGTGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGGCAGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATA > 1:318493/1‑141 CCCAACACAGAAGCTGACGAAAAGTCAGCTTACTATAATGTGCAAGTTGGGGTGGGGCCCCAACATAGAGAGTTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATC < 2:281554/141‑1 CCAACACAGAAGCTGACGAAAAGTCAGCTTACTATAATGTGCAAGTTGGGGTGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCA < 1:272437/141‑1 CCAACACAGAAGCTGACGAAAAGTCAGCTTACTATAATGTGCAAGTTGGGGTGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCA < 1:128159/141‑1 CAACACAGAAGCTGACGAAAAGTCAGCTTACTATAATGTGCAAGTTGGGGTGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCAT < 1:197648/141‑1 TGTCCTTAAAAATAAAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1694981‑1695128‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggggccccaACACAGAAGCTGACGAAAAGTCAGCTTACTATAATGTGCAAGTTGGGGTGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCAT < CP000730/1695176‑1695038 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |