New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1695128	51 (0.780)	4 (0.070)	4/238	NT	7.6%	coding (14/129 nt)	USA300HOU_1585	hypothetical protein
	?	CP000730	= 1695176	50 (0.830)					intergenic (‑35/+148)	USA300HOU_1585/lepA	hypothetical protein/GTP‑binding protein LepA

AAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTCC  >  CP000730/1694995‑1695268                                                                                                                                      |                                                                                                                                             aaatTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAAc                                                                                                                                       >  1:135595/1‑141 (MQ=255)  aatTACATGAGTAAAACTCATGCATAAGGGAGTAGGACAGAAATGATAAATTCGCAAAAATTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAAGTCTCTATGTTGTGGCCCCACCCCAACt                                                                                                                                      >  2:566825/1‑141 (MQ=21)   atTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACtt                                                                                                                                     >  1:232629/1‑141 (MQ=255)   atTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACtt                                                                                                                                     >  1:624341/1‑141 (MQ=255)         tGAGTAAAACTCATGCATAAGGGAGTGAGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCCCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACAt                                                                                                                               <  2:690223/141‑1 (MQ=255)         ggAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACAt                                                                                                                               <  2:408937/140‑1 (MQ=255)          gAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCAacacagaagctgacga                                                                                                                              <  2:436838‑M1/141‑17 (MQ=255)                   tCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCTAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGc                                                                                                                     <  2:119045/141‑1 (MQ=255)                   tCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGc                                                                                                                     >  1:520972/1‑141 (MQ=255)                   tCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGCGGCCCCACCCCAACTTGCCCCTTCTAGTAAGc                                                                                                                     >  2:575294/1‑141 (MQ=255)                     aTGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTg                                                                                                                   >  1:141105/1‑141 (MQ=255)                     aTGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTg                                                                                                                   <  1:147352/141‑1 (MQ=255)                       gCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGAc                                                                                                                 >  1:736811/1‑141 (MQ=255)                                  tGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCCCCCCAACTTGCCCATTATAGTCAGCTGACTTTTCGTCAGc                                                                                                      >  1:340343/1‑141 (MQ=255)                                   gggACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGccccac                                                                                                                                             >  2:226315/1‑101 (MQ=255)                                   gggACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGccccac                                                                                                                                             <  1:226315/101‑1 (MQ=255)                                   gggACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATGGCCGGTAGAATTTCTTTTCGAAATTCTCAATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCt                                                                                                     >  1:704424/1‑141 (MQ=255)                                     gACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTc                                                                                                   <  2:720725/141‑1 (MQ=255)                                      aCAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCt                                                                                                  >  1:659677/1‑141 (MQ=255)                                      aCAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCt                                                                                                  >  1:607965/1‑141 (MQ=255)                                        aGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCtgt                                                                                                >  2:739426/1‑141 (MQ=255)                                          aaaTGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCAacacagaagctgacgaaaagtcagcttactataatgtgcaagttgggg                                                                                              <  2:425392‑M1/141‑49 (MQ=255)                                            aTGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTtg                                                                                            <  1:197648‑M2/141‑3 (MQ=255)                                             tGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTtgg                                                                                           <  1:128159‑M2/141‑4 (MQ=255)                                             tGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTtgg                                                                                           <  1:272437‑M2/141‑4 (MQ=255)                                              gATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAACTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTtggg                                                                                          <  2:281554‑M2/141‑5 (MQ=255)                                                tatTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCAacacagaagctgacgaaaagtcagcttactataatgtgcaagttggggtggggc                                                                                        <  1:292986‑M1/141‑55 (MQ=255)                                                tatTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTtggggc                                                                                        >  1:318493‑M2/1‑135 (MQ=255)                                                    ttCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTtggggcccca                                                                                    >  2:520972‑M2/1‑131 (MQ=255)                                                          aaaTTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTta                                                                              >  1:41826/1‑141 (MQ=255)                                                            atttatttCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTtata                                                                            <  1:251351/141‑1 (MQ=255)                                                               tatttCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGc                                                                         <  2:714893/141‑1 (MQ=255)                                                               tatttCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGc                                                                         <  2:536580/141‑1 (MQ=255)                                                               tattcCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCAacacagaagctgacgaaaagtcagcttactataatgtgcaagttggggtggggccccaacatagagaat                                                                         <  1:331446‑M1/141‑70 (MQ=255)                                                                atttCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCt                                                                        <  2:379943/141‑1 (MQ=255)                                                                 tttCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTc                                                                       <  2:421653/141‑1 (MQ=255)                                                                    cgtcgtCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCAtt                                                                    <  2:240706/141‑1 (MQ=255)                                                                      tcttcCCACCCCACCTTGCATTTCCTGTAGAATTTCTTTTCGACATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGCCTCTTTTTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCAtttt                                                                  <  1:57729/138‑1 (MQ=21)                                                                           ccACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAActc                                                             <  1:266618/141‑1 (MQ=255)                                                                             aCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTg                                                           >  1:123572/1‑141 (MQ=255)                                                                                  aaCTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGAt                                                      >  1:106940/1‑141 (MQ=255)                                                                                  aaCTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGAt                                                      <  2:624341/141‑1 (MQ=255)                                                                                  aaCTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGAt                                                      <  2:232629/141‑1 (MQ=255)                                                                                    cTTGCATTGCCTGTAGAATTTCTTTTCGAAGTTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCTATgg                                                    >  2:706945/1‑141 (MQ=255)                                                                                        cATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGc                                                <  1:498311/141‑1 (MQ=255)                                                                                          ttGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCCACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCa                                              <  1:632401/141‑1 (MQ=255)                                                                                             ccTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAata                                           >  2:397218/1‑141 (MQ=255)                                                                                             ccTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAata                                           >  1:434059/1‑141 (MQ=255)                                                                                                gTAGAATTTCTTTTCGAAAATCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATaa                                        >  2:598851/1‑141 (MQ=255)                                                                                                 tAGAATTTCTTTTCGATGTTGACGATGTTGGGGCCCCGCCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCGTGTGTGTTGGGGCCCCAGTGTTATAAGCTCACTGTAACTCTGTCGAGGGCTGCCAATATAAc                                       <  1:598973/141‑1 (MQ=21)                                                                                                     aTTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTg                                   <  1:701917/141‑1 (MQ=255)                                                                                                        tCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTaa                                >  1:491942/1‑141 (MQ=255)                                                                                                        tCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTaa                                >  2:700285/1‑141 (MQ=255)                                                                                                          tttttttttttttttATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAg                              >  2:277502/15‑141 (MQ=255)                                                                                                            ttCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGcc                            >  2:715234/1‑141 (MQ=255)                                                                                                              cGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCa                          <  1:609502/141‑1 (MQ=255)                                                                                                               gAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAg                         >  1:150805/1‑141 (MQ=255)                                                                                                                aaaTTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAgg                        <  1:106383/141‑1 (MQ=255)                                                                                                                  aTTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTtggggccccaacatagagaatttcgaaaagaaattctacaggcaatgcaagttggggtgggacgacggaata                      <  1:331446‑M2/141‑73 (MQ=255)                                                                                                                   ttCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACg                     >  2:381561/1‑141 (MQ=255)                                                                                                                   ttCCCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACg                     >  2:585880/1‑141 (MQ=255)                                                                                                                      tctATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTa                  <  1:676496/141‑1 (MQ=255)                                                                                                                         aTGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAAtt               <  1:170764/141‑1 (MQ=255)                                                                                                                             tGGGGCCCCAacacagaagctgacgaaaagtcagcttactataatgtgcaagttggggtggggccccaacatagagaatttcgaaaagaaattctacaggcaatgcaagttggggtgggacgacgaaataaattttgcgaa           >  2:520972‑M1/1‑10 (MQ=255)                                                                                                                                 gCCCCAacacagaagctgacgaaaagtcagcttactataatgtgcaagttggggtggggccccaacatagagaatttcgaaaagaaattctacaggcagtgcaagttggggtgggacgacgaaataaattttgcgaaaata       >  1:318493‑M1/1‑6 (MQ=255)                                                                                                                                 gCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTtggggccccaacatagagaatttcgaaaagaaattctacaggcaatgcaagttggggtgggacgacgaaataaattttgcgaaaata       <  1:292986‑M2/141‑88 (MQ=255)                                                                                                                                 gCCCCACCCCAACTTGCAAATTATAGTAAGCTGACTTTTAGTCAGCGACTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTTACTCTGTTGATGGCTGCCAACAAATCATTATAAAGCTCAGGACGTTAATTTATCCTAg       >  1:230967/1‑141 (MQ=255)                                                                                                                                  ccccaccccaACTTGCACATTATAGTAATCGGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAgg      >  2:668246/1‑141 (MQ=255)                                                                                                                                   cccAacacagaagctgacgaaaagtcagcttactataatgtgcaagttggggtggggccccaacatagagagtttcgaaaagaaattctacaggcaatgcaagttggggtgggacgacgaaataaattttgcgaaaatatc     <  2:281554‑M1/141‑138 (MQ=255)                                                                                                                                    ccAacacagaagctgacgaaaagtcagcttactataatgtgcaagttggggtggggccccaacatagagaatttcgaaaagaaattctacaggcaatgcaagttggggtgggacgacgaaataaattttgcgaaaatatca    <  1:272437‑M1/141‑139 (MQ=255)                                                                                                                                    ccAacacagaagctgacgaaaagtcagcttactataatgtgcaagttggggtggggccccaacatagagaatttcgaaaagaaattctacaggcaatgcaagttggggtgggacgacgaaataaattttgcgaaaatatca    <  1:128159‑M1/141‑139 (MQ=255)                                                                                                                                     cAacacagaagctgacgaaaagtcagcttactataatgtgcaagttggggtggggccccaacatagagaatttcgaaaagaaattctacaggcaatgcaagttggggtgggacgacgaaataaattttgcgaaaatatcat   <  1:197648‑M1/141‑140 (MQ=255)                                                                                                                                      accccaACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCAcc  <  2:95410/141‑1 (MQ=255)                                                                                                                                      |                                                                                                                                             AAATTACATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTCC  >  CP000730/1694995‑1695268

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.