New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1695128	51 (0.780)	4 (0.070)	4/238	NT	7.6%	coding (14/129 nt)	USA300HOU_1585	hypothetical protein
	?	CP000730	= 1695176	50 (0.830)					intergenic (‑35/+148)	USA300HOU_1585/lepA	hypothetical protein/GTP‑binding protein LepA

ATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTCCCTCTTTTTAGTTATTAAACTTTATTCATTGTAAATTGTTAATTG  >  CP000730/1695038‑1695312                                                                                                                                           |                                                                                                                                         aTGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTtg                                                                                                                                        <  1:197648‑M2/141‑3 (MQ=255)  tGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTtgg                                                                                                                                       <  1:272437‑M2/141‑4 (MQ=255)  tGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTtgg                                                                                                                                       <  1:128159‑M2/141‑4 (MQ=255)   gATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAACTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTtggg                                                                                                                                      <  2:281554‑M2/141‑5 (MQ=255)     tatTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTtggggc                                                                                                                                    >  1:318493‑M2/1‑135 (MQ=255)         ttCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTtggggcccca                                                                                                                                >  2:520972‑M2/1‑131 (MQ=255)               aaaTTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTta                                                                                                                          >  1:41826/1‑141 (MQ=255)                 atttatttCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTtata                                                                                                                        <  1:251351/141‑1 (MQ=255)                    tatttCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGc                                                                                                                     <  2:536580/141‑1 (MQ=255)                    tatttCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGc                                                                                                                     <  2:714893/141‑1 (MQ=255)                     atttCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCt                                                                                                                    <  2:379943/141‑1 (MQ=255)                      tttCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTc                                                                                                                   <  2:421653/141‑1 (MQ=255)                         cgtcgtCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCAtt                                                                                                                <  2:240706/141‑1 (MQ=255)                           tcttcCCACCCCACCTTGCATTTCCTGTAGAATTTCTTTTCGACATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGCCTCTTTTTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCAtttt                                                                                                              <  1:57729/138‑1 (MQ=21)                                ccACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAActc                                                                                                         <  1:266618/141‑1 (MQ=255)                                  aCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTg                                                                                                       >  1:123572/1‑141 (MQ=255)                                       aaCTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGAt                                                                                                  >  1:106940/1‑141 (MQ=255)                                       aaCTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGAt                                                                                                  <  2:232629/141‑1 (MQ=255)                                       aaCTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGAt                                                                                                  <  2:624341/141‑1 (MQ=255)                                         cTTGCATTGCCTGTAGAATTTCTTTTCGAAGTTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCTATgg                                                                                                >  2:706945/1‑141 (MQ=255)                                             cATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGc                                                                                            <  1:498311/141‑1 (MQ=255)                                               ttGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCCACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCa                                                                                          <  1:632401/141‑1 (MQ=255)                                                  ccTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAata                                                                                       >  2:397218/1‑141 (MQ=255)                                                  ccTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAata                                                                                       >  1:434059/1‑141 (MQ=255)                                                     gTAGAATTTCTTTTCGAAAATCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATaa                                                                                    >  2:598851/1‑141 (MQ=255)                                                      tAGAATTTCTTTTCGATGTTGACGATGTTGGGGCCCCGCCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCGTGTGTGTTGGGGCCCCAGTGTTATAAGCTCACTGTAACTCTGTCGAGGGCTGCCAATATAAc                                                                                   <  1:598973/141‑1 (MQ=21)                                                          aTTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTg                                                                               <  1:701917/141‑1 (MQ=255)                                                             tCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTaa                                                                            >  2:700285/1‑141 (MQ=255)                                                             tCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTaa                                                                            >  1:491942/1‑141 (MQ=255)                                                               tttttttttttttttATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAg                                                                          >  2:277502/15‑141 (MQ=255)                                                                 ttCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGcc                                                                        >  2:715234/1‑141 (MQ=255)                                                                   cGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCa                                                                      <  1:609502/141‑1 (MQ=255)                                                                    gAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAg                                                                     >  1:150805/1‑141 (MQ=255)                                                                     aaaTTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAgg                                                                    <  1:106383/141‑1 (MQ=255)                                                                       aTTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTtggggccccaacatagagaatttcgaaaagaaattctacaggcaatgcaagttggggtgggacgacggaata                                                                  <  1:331446‑M2/141‑73 (MQ=255)                                                                        ttCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACg                                                                 >  2:381561/1‑141 (MQ=255)                                                                        ttCCCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACg                                                                 >  2:585880/1‑141 (MQ=255)                                                                           tctATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTa                                                              <  1:676496/141‑1 (MQ=255)                                                                              aTGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAAtt                                                           <  1:170764/141‑1 (MQ=255)                                                                                      gCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTtggggccccaacatagagaatttcgaaaagaaattctacaggcaatgcaagttggggtgggacgacgaaataaattttgcgaaaata                                                   <  1:292986‑M2/141‑88 (MQ=255)                                                                                      gCCCCACCCCAACTTGCAAATTATAGTAAGCTGACTTTTAGTCAGCGACTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTTACTCTGTTGATGGCTGCCAACAAATCATTATAAAGCTCAGGACGTTAATTTATCCTAg                                                   >  1:230967/1‑141 (MQ=255)                                                                                       ccccaccccaACTTGCACATTATAGTAATCGGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAgg                                                  >  2:668246/1‑141 (MQ=255)                                                                                           accccaACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCAcc                                              <  2:95410/141‑1 (MQ=255)                                                                                            ccccaACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTtggggccccaacatagagaatttcgaaaagaaattctacaggcaatgcaagttggggtgggacgacgaaataaattttgcgaaaatatcattt                                             <  2:425392‑M2/141‑94 (MQ=255)                                                                                                 aCTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTCCCTCttt                                        >  2:450125/1‑141 (MQ=255)                                                                                                  cTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTCCCTCtttt                                       <  2:645169/141‑1 (MQ=255)                                                                                                      cacaTTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTCCCTCTTTTTAGt                                   >  1:65768/1‑141 (MQ=255)                                                                                                      cacaTTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTCCCTCTTTTTAGt                                   >  2:310004/1‑141 (MQ=255)                                                                                                       acaTTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTCCCTCTTTTTAGtt                                  >  1:93766/1‑141 (MQ=255)                                                                                                         aTTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGAGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTCCCTCTTTTTAGttat                                >  1:567298/1‑141 (MQ=255)                                                                                                          ttATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTATAGCCCAGGACGTTAATTTATCCTAGGCTCCCTCTTTTTAGttatt                               <  2:736811/141‑1 (MQ=255)                                                                                                          ttATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTCCCTCTTTTTAGttatt                               >  2:490789/1‑141 (MQ=255)                                                                                                               gTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCCCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTCCCTCTTTTTTGTTTTTTAACt                          >  2:371658/1‑141 (MQ=255)                                                                                                                 aaGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTCCCTCTTTTTAGTTATTAAACttt                        <  1:98933/141‑1 (MQ=255)                                                                                                                            tCGTCAGCTTCTGTGTtggggccccaacatagagaatttcgaaaagaaattctacaggcaatgcaagttggggtgggacgacgaaataaattttgcgaaaatatcatttctgtcccactcccttatgcatgagttttactc             <  2:436838‑M2/141‑126 (MQ=255)                                                                                                                            tCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTCCCTCTTTTTAGTTATTAAACTTTATTCATTGTaa             >  2:100051/1‑141 (MQ=255)                                                                                                                              gTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTCCCTCTTTTTAGTTATTAAACTTTATTCATTGTAAAt           >  2:612084/1‑141 (MQ=255)                                                                                                                                  gCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTCCCTCTTTTTAGTTGTTAAACTTTATTCATTGTAAATTGtt       >  2:621506/1‑141 (MQ=255)                                                                                                                                  gCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTCCCTCTTTTTAGTTATTAAACTTTATTCATTGTAAATTGtt       >  1:376656/1‑141 (MQ=255)                                                                                                                                     tCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTCCCTCTTTTTAGTTATTAAACTTTATTCATTGTAAATTGTTAAt    <  1:303642/141‑1 (MQ=255)                                                                                                                                       tgtgTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTCCCTCTTTTTAGTTATTAAACTTTATTCATTGTAAATTGTTAATTg  >  2:267618/1‑141 (MQ=255)                                                                                                                                       tgtgTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTCCCTCTTTTTAGTTATTAAACTTTATTCATTGTAAATTGTTAATTg  <  2:128159/141‑1 (MQ=255)                                                                                                                                           |                                                                                                                                         ATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTCCCTCTTTTTAGTTATTAAACTTTATTCATTGTAAATTGTTAATTG  >  CP000730/1695038‑1695312

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.