| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 1747122 = | 44 (0.670) | 3 (0.050) | 3/230 | NT | 7.2% | intergenic (+83/+47) | USA300HOU_1635/secDF | hypothetical protein/RND superfamily resistance‑nodulation‑cell division protein:proton (H+) antiporter |
| ? | CP000730 | 1747161 = | 38 (0.650) | intergenic (+122/+8) | USA300HOU_1635/secDF | hypothetical protein/RND superfamily resistance‑nodulation‑cell division protein:proton (H+) antiporter | |||||
TCCGCTATGGGGAATAATGAAAAAACGTCAGTTG‑AAAAAATCGCCGAAACACAAATTAGTTGTATATAAAGAAAAGAAATCGAACGATGAAAAGATTTTAGTTTAAAATGAATTAAGCGGTATGTGAAACAATAAAGAGTTCACATACCGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1747274‑1747122‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcacataccgcttAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTTCAACTGACGTTTTTTCATTATTCCCCATAGCGGAACGGCAATGAAGATTGAAGAGAATA > CP000730/1747161‑1747299 TCCGCTATGGGGAATAATGAAAAAACGTCAGTTG‑AAAAAATCGCCGAAACACGAATTAGTTGTATATAAAGAAAAGAAATCGAACGATGAAAAGATTTTAGTTTAAAATGAATTAAGCGGTATGTGAAACAATAAAGAGTT < 1:280241/141‑1 CCGCTATGGGGAATAATGAAAAAACGTCAGTTGAAAAAAATCGCCGAAACACAAATTAGTTGTATATAAAGAAAAGAAATCGAACGATGAAAAGATTTTAGTTTAAAATGAATTAAGCGGTATGTGAAACAATAAAGAGTT > 2:314095/1‑141 TGGGTAATAATGAAAAAACGTCAGTTG‑AAAAAATCGCCGAAACACAAATTAGTTGTATATAAAGAAAAGAAATCGAACGATGAAAAGATTTTAGTTTAAAATGAATTAAGCGGTATGTGAAACAATAAAGAGTTCACATAC < 2:90863/141‑1 TGGGGAATAATGAAAAAACGTCAGTTG‑AAAAAATCGCCGAAACACAAATTAGTTGTATATAAAGAAAAGAAATCGAACGATGAAAAGATTTTAGTTTAAAATGAATTAAGCGGTATGTGAAACAATAAAGAGTTCACATAC > 1:482673/1‑141 TGGGGAATAATGAAAAAACGTCAGTTG‑AAAAAATCGCCGAAACACAAAATAGGTGTATATAAAGAAAAGAAATCGCACGATGAAAAGATTTTAGTTTAAAATGAATTAAGCGGTATGTGAAACAAGAAAGAGTTCACATAC > 2:713842/1‑141 GGAATAATGAAAAAACGTCAGTTG‑AAAAAATCGCCGAAACACAAATTAGTTGTATATAAAGAAAAGAAATCGAACGATGAAAAGATTTTAGTTTAAAATGAATTAAGCGGTATGTGAAACAATAAAGAGTTCACATACCGC < 1:660298/141‑1 GGAATAATGAAAAAACGTCAGTTG‑AAAAAATCGCCGAAACACAAATTAGTTGTATATAAAGAAAAGAAATCGAACGATGAAAAGATTTTAGTTTAAAATGAATTAAGCGGTATGTGAAACAATAAAGAGTTCACATACCGC < 2:671736/141‑1 GGAATAATGAAAAAACGTCAGTTG‑AAAAAATCGCCGAAACACAAATTAGTTGTATATAAAGAAAAGAAATCGAACGATGAAAAGATTTTAGTTTAAAATGAATTAAGCGGTATGTGAAACAATAAAGAGTTCACATACCGC < 1:660590/141‑1 AATAATGAAAAAACGTCAGTTG‑GAAAAATCGCCGAAACACAAATTAGTTGTATATAAAGAAAAGAAATCGAACGATGAAAAGATTTTAGTTTAAAATGAATTAAGCGGTATGTGAAACAATAAAGAGTTCACATACCGCTT < 1:551130/141‑1 AATAATGAAAAAACGTCAGTTG‑AAAAAATCGCCGAAACACAAATTAGTTGTATATAAAGAAAAGAAATCGAACGATGAAAAGATTTTAGTTTAAAATGAATTAAGCGGTATGTGAAACAATAAAGAGTTCACATACCGCTT > 2:375201/1‑141 AATAATGAAAAAACGTCAGTTG‑AAAAAATCGCCGAAACACAAATTAGTTGTATATAAAGAAAAGAAATCGAACGATGAAAAGATTTTAGTTTAAAATGAATTAAGCGGTATGTGAAACAATAAAGAGTTCACATACCGCTT > 2:375193/1‑141 AAGCGGTATGTGAAACAATAAAGAGTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGA > 2:599249/1‑74 AAGCGGTATGTGAAACAATAAAGAGTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGA < 1:599249/74‑1 AAACAATAAAGAGTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTTCAACTGACGTTTTTTCATTATTCCCCATAGCGGA > 1:679230/1‑141 AGAGTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTTCAACTGACGTTTTTTCATTATTCCCCATAGCTGAACGGCAATG > 1:701381/1‑141 TCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTTCAACTGACGTTTTTTCATTATTACCCATAGCGGAACGGCAATGAAGAT > 1:661559/1‑141 CACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTTCAACTGACGTTTTTTCATTATTCCCCATAGCGGAACGGCAATGAAGATT > 2:332410/1‑141 ACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTTCAACTGACGTTTTTTCATTATTCCCCATAGCGGAACGGCAATGAAGATTG > 1:42219/1‑141 TACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTTCAACTGACGTTTTTTCATTATTCCCCATAGCGGAACGGCAATGAAGATTGAAG < 1:495054/141‑1 CCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTTCAACTGACGTTTTTTCATTATTCCCCATAGCGGAACGGCAATGAAGATTGAAGAG < 2:602795/141‑1 CCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTTCAACTGACGTTTTTTCATTATTCCCCATAGCGGAACGGCAATGAAGATTGAAGAG > 2:83051/1‑141 GCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTTCAACTGACGTTTTTTCATTATTCCCCATAGCGGAACGGCAATGAAGATTGAAGAGAA > 2:492842/1‑141 CTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTCTCAACTGACGTTTTTTCATTATTCCCCATAGCGGAACGGCAATGAAGATTGAAGAGAAT > 1:137972/1‑141 TTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTTCAACTGACGTTTTTTCATTATTCCCCATAGCGGAACGGCAATGAAGATTGAAGAGAATA > 1:177983/1‑141 TCCGCTATGGGGAATAATGAAAAAACGTCAGTTG‑AAAAAATCGCCGAAACACAAATTAGTTGTATATAAAGAAAAGAAATCGAACGATGAAAAGATTTTAGTTTAAAATGAATTAAGCGGTATGTGAAACAATAAAGAGTTCACATACCGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1747274‑1747122‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcacataccgcttAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTTCAACTGACGTTTTTTCATTATTCCCCATAGCGGAACGGCAATGAAGATTGAAGAGAATA > CP000730/1747161‑1747299 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |