New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1747122 =	44 (0.670)	3 (0.050)	3/230	NT	7.2%	intergenic (+83/+47)	USA300HOU_1635/secDF	hypothetical protein/RND superfamily resistance‑nodulation‑cell division protein:proton (H+) antiporter
	?	CP000730	1747161 =	38 (0.650)					intergenic (+122/+8)	USA300HOU_1635/secDF	hypothetical protein/RND superfamily resistance‑nodulation‑cell division protein:proton (H+) antiporter

AAAGCACTTATCTAAATAATCAAGACTTTAATTATACCATTTTTTAAAAATGAATGCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTT‑CAACTGACGTTTTTTCATTATTCCCCATAGCGGAACGGCAATGAAGATTGAAGAGAATA  >  CP000730/1747021‑1747299                                                                                                                                             |                                                                                                                                            aaaGCACTTATCTAAATNNTCAAGACTTNAATTNTACNATTTTTTAAATATTTTTGCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCTGTATGTGAACTCTTTATTGTTTCACTTATCGCTTa                                                                                                                                             >  1:488266/1‑141 (MQ=255)   aGCACTTATCTAAATAATCAAGACTTTAATTATACCATTTTTTAAAAATGAATGCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGGACTCTTTATCGTTTCACCTACCGCTaaaa                                                                                                                                           >  1:342647/1‑140 (MQ=255)   aGCACTTATCTAAATAATCAAGACTTTAATTATACCATTTTTTAAAAATGAATGCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAAt                                                                                                                                           >  1:446539/1‑141 (MQ=255)    gCACTTATCTAAATAATCAAGACTTTAATTATACCATTTTTTAAAAATGAATGCGGGAACTTATGTATAGATAGTGTGATAAGTGTAAATAAAGTAAAAAGCGGTATGGGAACTCTTTATTGTTTCACATACCGCTTAAtt                                                                                                                                          >  1:196411/1‑141 (MQ=255)      aCTTATCTAAATAATCAAGACTTTAATTATACCATTTTTTATTTTTTAATGCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCa                                                                                                                                        >  2:532823/1‑141 (MQ=255)      aCTTATCTAAATAATCAAGACTTTAATTATACCATTTTTTAAAAATGAATGCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCa                                                                                                                                        >  2:225263/1‑141 (MQ=255)       cTTATCTAAATAATCAAGACTTTAATTATACCATTTTTTAAAAATGAATGCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCAt                                                                                                                                       >  1:429030/1‑141 (MQ=255)        ttATCTAAATAATCAAGACTTTAATTATACCATTTTTTAAAAATGAATGCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCAtt                                                                                                                                      >  2:530581/1‑141 (MQ=255)          aTCTAAATAATCAAGACTTTAATTATACCATTTTTTAAAAATGAATGCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCAtttt                                                                                                                                    >  1:253320/1‑141 (MQ=255)            cTAAATAATCAAGACTTTAATTATACCATTTTTTAAAAATGAATGCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTaa                                                                                                                                  >  1:404566/1‑141 (MQ=255)                 taatCAAGACTTTAATTATACCATTTTTTAAAAATGAATGCGGAAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTaa                                                                                                                             <  2:382884/141‑1 (MQ=255)                   agcAAGACTTTAATTATACCATTTTTTAAAAATGAATGCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTagtttaaaa                                                                                                                           <  2:391834/139‑9 (MQ=255)                     cAAGACTTTAATTATACCATTTTTTAAAAATGAATGCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATc                                                                                                                         >  1:723422/1‑141 (MQ=255)                        gACTTTAATTATACCATTTTTTAAAAATTAATGCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCttt                                                                                                                      >  2:305371/1‑141 (MQ=255)                           tttAATTATACCATTTTTTAAAAATGAATGCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCa                                                                                                                   <  2:342396/141‑1 (MQ=255)                           tttAATTATACCATTTTTTAAAAATGAATGCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCa                                                                                                                   <  1:368001/141‑1 (MQ=255)                             tAATTATACCATTTTTTAAAAATGAATGCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATc                                                                                                                 >  1:341544/1‑141 (MQ=255)                                  ataCCATTTTTTAAAAATGAATGCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCg                                                                                                            >  2:784235/1‑141 (MQ=255)                                   taCCATTTTTTAAAAATGAATGCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGa                                                                                                           <  2:291371/141‑1 (MQ=255)                                     ccATTTTTTAAAAATGAATGCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGAtt                                                                                                         <  1:179252/141‑1 (MQ=255)                                     ccATTTTTTAAAAATGAATGCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGAtt                                                                                                         <  1:435221/141‑1 (MQ=255)                                      cATTTTTTAAAAATGAATGCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGAttt                                                                                                        >  1:476934/1‑141 (MQ=255)                                               aaaaTGAATGCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTtcttttcttt                                                                                               >  1:578611/1‑141 (MQ=255)                                                  atgaatgCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTtata                                                                                            <  2:25526/141‑1 (MQ=255)                                                             aaCTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAAtt                                                                                 <  1:654823/141‑1 (MQ=255)                                                                  atttatATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTgtgt                                                                            >  1:59602/1‑141 (MQ=255)                                                                     tatatataTTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTc                                                                         >  1:547948/1‑141 (MQ=255)                                                                               ttGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTATTTTGTGTTTCGGCGAttttt                                                               >  2:657864/1‑141 (MQ=255)                                                                               ttGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGAttttt                                                               <  1:133393/141‑1 (MQ=255)                                                                                  ttaaatttaaatAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTT‑Ca                                                           >  1:134703/1‑141 (MQ=255)                                                                                   taaatttaaatAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTT‑Caa                                                          >  2:708201/1‑141 (MQ=255)                                                                                    aaatttaaatAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTT‑CAAc                                                         >  1:360530/1‑141 (MQ=255)                                                                                       tttaaatAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTT‑CAACTGa                                                      <  1:164044/141‑1 (MQ=255)                                                                                             taaaGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTT‑CACCTGACGtttt                                                >  2:414069/1‑141 (MQ=255)                                                                                              aaaGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTT‑CAACTGACGttttt                                               <  2:163442/141‑1 (MQ=255)                                                                                                aGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTT‑CAACTGACGTTTTTTc                                             <  2:66817/141‑1 (MQ=255)                                                                                                     aaaGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTAGTGTTTCGGCGATTTTTT‑CAACTGACGTTTTTTCattat                                        >  1:580106/1‑141 (MQ=255)                                                                                                     aaaGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTAGTTGTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTTTATACAACTAATTTGTTTTTCGGCGATTTTTT‑CTACTGACGTTTTTTTatttt                                        >  2:137801/1‑139 (MQ=255)                                                                                                      aagcggtatgtgaaacaataaagagttcacataccgcttAATTCATTTTAAACTAAAATCTTTTCATCGTTCGa                                                                                                           >  2:599249‑M2/40‑74 (MQ=255)                                                                                                      aagcggtatgtgaaacaataaagagttcacataccgcttAATTCATTTTAAACTAAAATCTTTTCATCGTTCGa                                                                                                           <  1:599249‑M2/35‑1 (MQ=255)                                                                                                      AAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTT‑CAACTGACGTTTTTTCattatt                                       >  2:375201‑M1/1‑141 (MQ=255)                                                                                                      AAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTT‑CAACTGACGTTTTTTCattatt                                       >  2:375193‑M1/1‑141 (MQ=255)                                                                                                      AAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTC‑CAACTGACGTTTTTTCattatt                                       <  1:551130‑M1/141‑1 (MQ=255)                                                                                                        GCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTT‑CAACTGACGTTTTTTCATTATTcc                                     <  2:671736‑M1/141‑1 (MQ=255)                                                                                                        GCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTT‑CAACTGACGTTTTTTCATTATTcc                                     <  1:660590‑M1/141‑1 (MQ=255)                                                                                                        GCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTT‑CAACTGACGTTTTTTCATTATTcc                                     <  1:660298‑M1/141‑1 (MQ=255)                                                                                                           GTATGTGAACTCTTTCTTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTGCGATTTCTTTTCTTTATATACACCTATTTTGTGTTTCGGCGATTTTTT‑CAACTGACGTTTTTTCATTATTCCCCa                                  >  2:713842‑M1/1‑141 (MQ=255)                                                                                                           GTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTT‑CAACTGACGTTTTTTCATTATTCCCCa                                  >  1:482673‑M1/1‑141 (MQ=255)                                                                                                           GTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTT‑CAACTGACGTTTTTTCATTATTACCCa                                  <  2:90863‑M1/141‑1 (MQ=255)                                                                                                                  aaacaataaagagttcacataccgcttAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTT‑CAACTGACGTTTTTTCATTATTCCCCATAGCGGa                           >  1:679230‑M2/28‑141 (MQ=255)                                                                                                                  AACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTTTCAACTGACGTTTTTTCATTATTCCCCATAGCgg                            >  2:314095‑M1/1‑141 (MQ=255)                                                                                                                  AACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTCGTGTTTCGGCGATTTTTT‑CAACTGACGTTTTTTCATTATTCCCCATAGCGGa                           <  1:280241‑M1/141‑1 (MQ=255)                                                                                                                    ctctTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTT‑CAACTGACGTTTTTTCATTATTCCCCATAGCGGAAc                         >  1:279053/1‑141 (MQ=255)                                                                                                                    ctctTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTT‑CAACTGACGTTTTTTCATTATTCCCCATAGCGGAAc                         >  2:538189/1‑141 (MQ=255)                                                                                                                      ctTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTT‑CAACTGACGTTTTTTCATTATTCCCCATAGCGGAACgg                       <  1:497599/141‑1 (MQ=255)                                                                                                                        ttATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTT‑CAACTGACGTTTTTTCATTATTCCCCATAGCGGAACGGCa                     >  2:715626/1‑141 (MQ=255)                                                                                                                           ttGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCTGCGATTTTTT‑CAACTGACGTTTTTTCATTATTCCCCATAGCGGAACGGCAATg                  <  1:399839/141‑1 (MQ=255)                                                                                                                           ttGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATGTGTGTTTCGGCGATTTTTT‑CAACTGACGTTTTTTCATTATTCCCCATAGCGGAACGGCAATg                  <  2:9990/141‑1 (MQ=255)                                                                                                                           agagttcacataccgcttAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTT‑CAACTGACGTTTTTTCATTATTCCCCATAGCTGAACGGCAATg                  >  1:701381‑M2/19‑141 (MQ=255)                                                                                                                             ttttCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTT‑CAACTGACGTTTTTTCATTATTCCCCATAGCGGAACGGCAATGaa                <  2:488266/140‑1 (MQ=255)                                                                                                                             gTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTT‑CAACTGACGTTTTTTCATTATTCCCCATAGCGGAACGGCAATGaa                <  1:193954/141‑1 (MQ=255)                                                                                                                                tcacataccgcttAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTT‑CAACTGACGTTTTTTCATTATTACCCATAGCGGAACGGCAATGAAGAt             >  1:661559‑M2/14‑141 (MQ=255)                                                                                                                                 cacataccgcttAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTT‑CAACTGACGTTTTTTCATTATTCCCCATAGCGGAACGGCAATGAAGAtt            >  2:332410‑M2/13‑141 (MQ=255)                                                                                                                                  acataccgcttAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTT‑CAACTGACGTTTTTTCATTATTCCCCATAGCGGAACGGCAATGAAGATTg           >  1:42219‑M2/12‑141 (MQ=255)                                                                                                                                     taccgcttAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTT‑CAACTGACGTTTTTTCATTATTCCCCATAGCGGAACGGCAATGAAGATTGAag        <  1:495054‑M2/133‑1 (MQ=255)                                                                                                                                       ccgcttAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTT‑CAACTGACGTTTTTTCATTATTCCCCATAGCGGAACGGCAATGAAGATTGAagag      <  2:602795‑M2/135‑1 (MQ=255)                                                                                                                                       ccgcttAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTT‑CAACTGACGTTTTTTCATTATTCCCCATAGCGGAACGGCAATGAAGATTGAagag      >  2:83051‑M2/7‑141 (MQ=255)                                                                                                                                         gcttAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTT‑CAACTGACGTTTTTTCATTATTCCCCATAGCGGAACGGCAATGAAGATTGAAGAGaa    >  2:492842‑M2/5‑141 (MQ=255)                                                                                                                                          cttAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTCT‑CAACTGACGTTTTTTCATTATTCCCCATAGCGGAACGGCAATGAAGATTGAAGAGAAt   >  1:137972‑M2/4‑141 (MQ=255)                                                                                                                                           ttAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTT‑CAACTGACGTTTTTTCATTATTCCCCATAGCGGAACGGCAATGAAGATTGAAGAGAATa  >  1:177983‑M2/3‑141 (MQ=255)                                                                                                                                             |                                                                                                                                            AAAGCACTTATCTAAATAATCAAGACTTTAATTATACCATTTTTTAAAAATGAATGCGGGAACTTATTTATATATATTTTGTTAAATTTAAATAAAGTAAAAAGCGGTATGTGAACTCTTTATTGTTTCACATACCGCTTAATTCATTTTAAACTAAAATCTTTTCATCGTTCGATTTCTTTTCTTTATATACAACTAATTTGTGTTTCGGCGATTTTTT‑CAACTGACGTTTTTTCATTATTCCCCATAGCGGAACGGCAATGAAGATTGAAGAGAATA  >  CP000730/1747021‑1747299

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.