| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 2186610 = | 71 (1.090) | 3 (0.050) | 3/240 | NT | 4.9% | coding (5/480 nt) | rsbW | anti‑sigma B factor |
| ? | CP000730 | 2186648 = | 50 (0.820) | coding (295/327 nt) | rsbV | anti‑sigma B factor antagonist | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TATTCGTAGGTACATTAAAAGCATTAAACCAAAATGATAAAGAACTATACATTTTAGGTGTGTCAGATCGTATCGGTAGACTATTTGAAATTACTGGTCTTAAGGATTTAATGCATGTTAATGAAGGAACGGAGGTCGAATAACATGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2186758‑2186610‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taacatgcaTTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTAAAATGTATAGTTCTTTATCATTTTGGTTTAATGCTTTTAATGTACCTACGAATAAACCTAAACCTGTCGAATCCATATAAC > CP000730/2186648‑2186785 TATTCGTAGGTACATTAAAAGCATTAAACCAAAATGATAAAGTACTATACATTTTAGGTGTGTCAGATCGTATCGGTAGGCTATTTGAAATTACTGGTCTTAAGGATTTAATGCATGTTAATGAAGGAACGGAGGTCGAAT > 1:355722/1‑141TATTCGTAGGTACATTAAAAGCATTAAACCAAAATGATAAAGAACTATACATTTTAGGTGTGTCAGATCGTATCGGTAGACTATTTGAAATTACTGGTCTTAAGGATTTAATGCATGTTAATGAAGGAACGGAGGTCGAAT > 2:647349/1‑141 TTCGTAGGTACATTAAAAGCATTAAACCAAAATGATAAAGAACTATACATTTTAGGTGTGTCAGATCGTATCGGTAGACTATTTGAAATTACTGGTCTTAAGGATTTAATGCATGTTAATGAAGGAACGGAGGTCGAATAA > 1:328223/1‑141 gCGTAGGTACATTAAAAGCATTAAACCAAAATGATAAAGAACTATACATTTTAGGTGTGTCAGATCGTATCGGTAGACTATTTGAAATTACTGGTCTTAAGGATTTAATGCATGTTAATGAAGGAACGGAGGTCGAATAAC > 2:632869/2‑141 gCGTAGGTACATTAAAAGCATTAAACCAAAATGATAAAGAACTATACATTTTAGGTGTGTCAGATCGTATCGGTAGACTATTTGAAATTACTGGTCTTAAGGATTTAATGCATGTTAATGAAGGAACGGAGGTCGAATAAC > 2:632892/2‑141 GTAGGTACATTAAAAGCATTAAACCAAAATGATAAAGAACTATACATTTTAGGTGTGTCAGATCGTATCGGTAGACTATTTGAAATTACTGGTCTTAAGGATTTAATGCATGTTAATGAAGGAACGGAGGTCGAATAACAT < 1:613878/141‑1 ACTGGTCTTAAGGATTTAATGCATGTTAATGAAGGAACGGAGGTCGAATAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTAAAATGTATAGTTCTTTATCATTTTGGT > 1:496093/1‑141 AATGCATGTTAATGAAGGAACGGAGGTCGAATAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTAAAATGTATAGTTCTTTATCATTTTGGTTTAATGCTTTTAATGTA < 2:496093/141‑1 CATGTTAATGAAGGAACGGAGGTCGAATAACATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTAAAATGTATAGTTCTTTATCATTTTGGTTTAATGCTTTTAATGTACCTA > 1:156529/1‑141 CATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTAAAATGTATAGTTCTTTATCATTTTGGTTTAATGCTTTTAATGTACCTACGAATAAACCTAAACCTGTCGAATCCATAT > 2:237830/1‑141 CATGCATCAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTAAAATGTATAGTTCTTTATCATTTTGGTTTAATGCTTTTAATGTACCTACGAATAAACCTAAACCTGTCGAATCCATAT > 1:621662/1‑141 ATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTAAAATGTATAGTTCTTTATCATTTTGGTTTAATGCTTTTAATGTACCTACGAATAAACCTAAACCTGTCGAATCCATATA > 2:562840/1‑141 ATGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTAAAATGTATAGTTCTTTATCATTTTGGTTTAATGCTTTTAATGTACCTACGAATAAACCTAAACCTGTCGAATCCATATA > 2:340312/1‑141 gGCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTAAAATGTATAGTTCTTTATCATTTTGGTTTAATGCTTTTAATGTACCTACGAATAAACCTAAACCTGTCGAATCCATATAA < 1:135681/140‑1 GCATTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTAAAATGTATAGTTCTTTATCATTTTGGTTTAATGCTTTTAATGTACCTACGAATAAACCTAAACCTGTCGAATCCATATAAC < 2:300122/141‑1 TATTCGTAGGTACATTAAAAGCATTAAACCAAAATGATAAAGAACTATACATTTTAGGTGTGTCAGATCGTATCGGTAGACTATTTGAAATTACTGGTCTTAAGGATTTAATGCATGTTAATGAAGGAACGGAGGTCGAATAACATGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2186758‑2186610‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taacatgcaTTAAATCCTTAAGACCAGTAATTTCAAATAGTCTACCGATACGATCTGACACACCTAAAATGTATAGTTCTTTATCATTTTGGTTTAATGCTTTTAATGTACCTACGAATAAACCTAAACCTGTCGAATCCATATAAC > CP000730/2186648‑2186785 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |