New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2207748 =	67 (1.030)	4 (0.070)	4/236	NT	6.3%	intergenic (+109/+155)	rodA/USA300HOU_2080	FtsW/RodA/SpoVE family cell division protein/hypothetical protein
	?	CP000730	2207798 =	57 (0.960)					intergenic (+159/+105)	rodA/USA300HOU_2080	FtsW/RodA/SpoVE family cell division protein/hypothetical protein

CTGTGATTGTGAATCACACACCGTTAAAGCTATCGTCGGACTATTCGATGATAGCTTTTTTGACTGGATTTACTAAAATGAAAGCAAGTACTATATAACAAAATCCCTCTTTAGAGTGTACATTTTACAATGTGTACTTCAAAGAGGGATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2207898‑2207748 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagagggattTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATTAGATGCTG  >  CP000730/2207798‑2207937                                                                                                                                                                                                                                                                                                     gtgtgattcacAATCACACACCGTTAAAGCTATCGTCGGACTATTCGATGATAGCTTTTTTGACTGGATTTACTAAAATGAAAGCAAGTACTATATAACAAAATCCCTCTTTAGAGTGTACATTTTACAATGTGTACTTCA                                                                                                                                                        >  2:367247/12‑141     GATTGTGAATCACACACCGTTAAAGCTATCGTCGGACTATTCGATGATAGCTTTTTTGACTGGATTTACTAAAATGAAAGCAAGTACTATATAACAAAATCCCTCTTTAGAGTGTACATTTTACAATGTGTACTTCAAAGA                                                                                                                                                    <  1:288558/141‑1          TGAATCACACACCGTTAAAGCTATCGTCGGACTATTCGATGATAGCTTTTTTGACTGGATTTACTAAAATGAAAGCAAGTACTATATAACAAAATCCCTCTTTAGAGTGTACATTTTACAATGTGTACTTCAAAGAGGGAT                                                                                                                                               <  2:54226/141‑1           GAATCACACACCGTTAAAGCTATCGTCGGACTATTCGATGATAGCTTTTTTGACTGGATTTACTAAAATGAAAGCAAGTACTATATAACAAAATCCCTCTTTAGAGTGTACATTTTACAATGTGTACTTCAAAGAGGGATT                                                                                                                                              <  1:668980/141‑1                                                                                                           CTCTTTAGAGTGTACATTTTACAATGTGTACTTCAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAAT                                              >  1:125257/1‑141                                                                                                            TCTTTAGAGTGTACATTTTACAATGTGTACTTCAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATC                                             >  1:71915/1‑141                                                                                                               TTAGAGTGTACATTTTACAATGTGTACTTCAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCA                                                                                         >  1:337140/1‑94                                                                                                               TTAGAGTGTACATTTTACAATGTGTACTTCAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCA                                                                                         <  2:337140/94‑1                                                                                                                                             AAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTA            >  2:177728/1‑141                                                                                                                                               AGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTTAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATT          <  1:604559/141‑1                                                                                                                                                      TTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATTAGATGCT   >  2:205533/1‑141                                                                                                                                                      TTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATTAGATGCT   >  1:711070/1‑141                                                                                                                                                      TTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATTAGATGCT   >  2:608758/1‑141                                                                                                                                                       TTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATTAGATGCTG  <  1:183220/141‑1                                                                                                                                                       TTTGCTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATTAGATGCTG  >  2:132404/1‑141                                                                                                                                                                                                                                                                                                     CTGTGATTGTGAATCACACACCGTTAAAGCTATCGTCGGACTATTCGATGATAGCTTTTTTGACTGGATTTACTAAAATGAAAGCAAGTACTATATAACAAAATCCCTCTTTAGAGTGTACATTTTACAATGTGTACTTCAAAGAGGGATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2207898‑2207748 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagagggattTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTCACAATCACAGTCAATTATTTTAATTCGTGACTTACTTTATTAGATGCTG  >  CP000730/2207798‑2207937

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.