New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2207748 =	67 (1.030)	4 (0.070)	4/236	NT	6.3%	intergenic (+109/+155)	rodA/USA300HOU_2080	FtsW/RodA/SpoVE family cell division protein/hypothetical protein
	?	CP000730	2207798 =	57 (0.960)					intergenic (+159/+105)	rodA/USA300HOU_2080	FtsW/RodA/SpoVE family cell division protein/hypothetical protein

ATGTCGATTTATACCATCCAAAAAGTAATTAATTTAAACTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTC  >  CP000730/2207608‑2207888                                                                                                                                             |                                                                                                                                             cagcatctaataaagtaagtcacgaattaaaataattgactgtgattgtgaatcacacaccgttaaagctatcgtcggactattcgatgatagcttttttgactggatttactaaaatgaaagcaagtactatatagcaaa                                                                                                                                              >  2:132404‑M1/141‑141 (MQ=255) cagcatctaataaagtaagtcacgaattaaaataattgactgtgattgtgaatcacacaccgttaaagctatcgtcggactattcgatgatagcttttttgactggatttactaaaatgaaagcaagtactatataacaaa                                                                                                                                              <  1:183220‑M1/1‑1 (MQ=255)  tGTCGATTTATACCATCCAAAAAGTAATTAATTTAAACTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACaa                                                                                                                                             >  2:37814/1‑141 (MQ=255)  agcatctaataaagtaagtcacgaattaaaataattgactgtgattgtgaatcacacaccgttaaagctatcgtcggactattcgatgatagcttttttgactggatttactaaaatgaaagcaagtactatataacaaaa                                                                                                                                             >  2:205533‑M1/140‑141 (MQ=255)  agcatctaataaagtaagtcacgaattaaaataattgactgtgattgtgaatcacacaccgttaaagctatcgtcggactattcgatgatagcttttttgactggatttactaaaatgaaagcaagtactatataacaaaa                                                                                                                                             >  2:608758‑M1/140‑141 (MQ=255)  agcatctaataaagtaagtcacgaattaaaataattgactgtgattgtgaatcacacaccgttaaagctatcgtcggactattcgatgatagcttttttgactggatttactaaaatgaaagcaagtactatataacaaaa                                                                                                                                             >  1:711070‑M1/140‑141 (MQ=255)   gTCGATTTATACCATCCAAAAAGTAATTAATTTAAACTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAAt                                                                                                                                            >  1:136817/1‑141 (MQ=255)   gTCGATTTATACCATCCAAAAAGTAATTAATTTAAACTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAAt                                                                                                                                            >  1:511076/1‑141 (MQ=255)    tCGATTTATACCATCCAAAAAGTAATTAATTTAAACTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATc                                                                                                                                           <  1:704688/141‑1 (MQ=255)     cGATTTATACCATCCAAAAAGTAATTAATTTAAACTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATcc                                                                                                                                          <  1:33056/141‑1 (MQ=255)      gATTTATACCATCCAAAAAGTAATTAATTTAAACTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATccc                                                                                                                                         <  1:199186/141‑1 (MQ=255)      gATTTATACCATCCAAAAAGTAATTAATTTAAACTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATccc                                                                                                                                         >  1:88067/1‑141 (MQ=255)         ttATACCATCCAAAAAGTAATTAATTTAAACTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCctct                                                                                                                                      <  2:344335/141‑1 (MQ=255)         ttATACCAACCAAAAAGTAATTAATTTAAACTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCctct                                                                                                                                      <  2:122495/141‑1 (MQ=255)         aataaagtaagtcacgaattaaaataattgactgtgattgtgaatcacacaccgttaaagctatcgtcggactattcgatgatagcttttttgactggattaactaaaatgaaagcaagtactatataacaaAATCCctct                                                                                                                                      <  1:604559‑M1/9‑1 (MQ=255)          tataCCATCCAAAAAGTAATTAATTTAAACTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCtt                                                                                                                                     <  1:367560/141‑1 (MQ=255)           taaagtaagtcacgaattaaaataattgactgtgattgtgaatcacacaccgttaaagctatcgtcggactattcgatgatagcttttttgactggatttactaaaatgaaagcaagtactatataacaaAATCCCTCttt                                                                                                                                    >  2:177728‑M1/131‑141 (MQ=255)             aCCATCCAAAAAGTAATTAATTTAAACTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGa                                                                                                                                  <  1:641553/141‑1 (MQ=255)                aTCCAAAAAGTAATTAATTTAAACTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGt                                                                                                                               <  1:120823/141‑1 (MQ=255)                 tCCAAAAAGTAATTAATTTAAACTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTa                                                                                                                              >  2:556906/1‑141 (MQ=255)                 tCCAAAAAGTAATTAATTTAAACTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTa                                                                                                                              >  2:238553/1‑141 (MQ=255)                       aaGTAATTAATTTAAACTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACAtt                                                                                                                        >  1:63486/1‑141 (MQ=255)                       aaGTAATTAATTTAAACTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACAtt                                                                                                                        >  1:690421/1‑141 (MQ=255)                        aGTAATTAATTTAAACTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATACCTCTTTGAAGTACACATTg                                                                                                                       >  1:551459/1‑141 (MQ=255)                         gTAATTAATTTAAACTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGt                                                                                                                      >  1:367247/1‑141 (MQ=255)                                attTAAACTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGt                                                                                                               >  1:628318/1‑141 (MQ=255)                                   tAAACTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTaca                                                                                                            <  1:729702/141‑1 (MQ=255)                                    aaaCTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTacac                                                                                                           <  1:267238/141‑1 (MQ=255)                                      aCTATTTTGAGTTTCAAATATCATAACTTTTCTAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTTTATAATTTagattc                                                                                                         >  2:183220/1‑136 (MQ=255)                                      aCTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACActc                                                                                                         >  1:112071/1‑141 (MQ=255)                                            gattgtgaatcacacaccgttaaagctatcgtcggactattcgatgatagcttttttgactggatttactaaaatgaaagcaagtactatataacaaAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAaga                                                                                                   >  1:71915‑M1/98‑141 (MQ=255)                                             attgtgaatcacacaccgttaaagctatcgtcggactattcgatgatagcttttttgactggatttactaaaatgaaagcaagtactatataacaaAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAagag                                                                                                  >  1:125257‑M1/97‑141 (MQ=255)                                              gAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAgg                                                                                                 >  1:167188/1‑141 (MQ=255)                                              gAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAgg                                                                                                 >  1:463666/1‑141 (MQ=255)                                                  ttCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGAtt                                                                                             <  1:90476/141‑1 (MQ=255)                                                   tCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGAttt                                                                                            >  1:714489/1‑141 (MQ=255)                                                          tCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTtata                                                                                     >  1:394584/1‑141 (MQ=255)                                                           cATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATAGAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTtatat                                                                                    <  1:50497/141‑1 (MQ=255)                                                              aaCTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGt                                                                                 >  2:385847/1‑141 (MQ=255)                                                               aCTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTa                                                                                >  2:120708/1‑141 (MQ=255)                                                                 ttttCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACt                                                                              <  1:520046/141‑1 (MQ=255)                                                                 ttttCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACt                                                                              <  1:456344/141‑1 (MQ=255)                                                                  tttCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACtt                                                                             >  2:666526/1‑141 (MQ=255)                                                                   ttCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTACAGAGGGATTTTGCTATATAGTACTTg                                                                            >  2:192080/1‑141 (MQ=255)                                                                   ttCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTg                                                                            <  1:100697/141‑1 (MQ=255)                                                                     cAAGATGACGTTATATNGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCt                                                                          >  1:633951/1‑141 (MQ=255)                                                                     cAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCt                                                                          >  1:348965/1‑141 (MQ=255)                                                                       aGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCttt                                                                        >  2:638932/1‑141 (MQ=255)                                                                            aCGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCAttt                                                                   >  2:671810/1‑141 (MQ=255)                                                                             cGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCAtttt                                                                  <  1:37814/141‑1 (MQ=255)                                                                                   ataGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTaaa                                                            <  1:686188/141‑1 (MQ=255)                                                                                       tCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCa                                                        >  2:376854/1‑141 (MQ=255)                                                                                        tgatagcttttttgactggatttactaaaatgaaagcaagtactatataacaaAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTaa                                                                                                      <  2:337140‑M1/41‑1 (MQ=255)                                                                                        tgatagcttttttgactggatttactaaaatgaaagcaagtactatataacaaAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTaa                                                                                                      >  1:337140‑M1/54‑94 (MQ=255)                                                                                        cTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAg                                                       <  1:87692/141‑1 (MQ=255)                                                                                        cTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAg                                                       >  1:60848/1‑141 (MQ=255)                                                                                        cTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAg                                                       <  1:348214/141‑1 (MQ=255)                                                                                          aTTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTc                                                     >  1:714788/1‑141 (MQ=255)                                                                                           tttACGTCGTCAATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATTTACACTCTAAAGATTGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCa                                                    <  2:115988/141‑1 (MQ=255)                                                                                              aCGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCaaaa                                                 >  2:174440/1‑141 (MQ=255)                                                                                                gtcgtcGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCaaaaaa                                               >  1:418331/1‑141 (MQ=255)                                                                                                  cgtcgATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAGACCAGTCAAAAAAGc                                             >  1:241543/1‑141 (MQ=255)                                                                                                    tcgATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTa                                           >  1:46251/1‑141 (MQ=255)                                                                                                             aaTGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTaaa                                                                                                                   <  2:418665/60‑1 (MQ=255)                                                                                                             aaTGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTaaa                                                                                                                   >  1:418665/1‑60 (MQ=255)                                                                                                                 tCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTc                              <  1:647821/141‑1 (MQ=255)                                                                                                                 tCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTc                              >  1:165125/1‑141 (MQ=255)                                                                                                                  cATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTcc                             <  2:628318/141‑1 (MQ=255)                                                                                                                   atatatAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCcg                            <  1:238553/141‑1 (MQ=255)                                                                                                                     atataGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCcgac                          >  1:635532/1‑141 (MQ=255)                                                                                                                      tataGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCcgacg                         >  2:247768/1‑141 (MQ=255)                                                                                                                      tataGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCcgacg                         >  1:513119/1‑141 (MQ=255)                                                                                                                       ataGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCcgacga                        <  1:192080/141‑1 (MQ=255)                                                                                                                       ataGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTAAAAAAAGCTATCATCGAATAGTCcgacga                        <  2:88067/141‑1 (MQ=255)                                                                                                                             atTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTc                                                     <  1:501909/106‑1 (MQ=255)                                                                                                                             atTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTc                                                     >  2:501909/1‑106 (MQ=255)                                                                                                                             atTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCtt                  <  1:138596/141‑1 (MQ=255)                                                                                                                                aCTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGCTTGCTTTaa               >  2:703618/1‑141 (MQ=255)                                                                                                                                   cGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACgg            <  2:477296/141‑1 (MQ=255)                                                                                                                                   cGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACgg            >  1:390471/1‑141 (MQ=255)                                                                                                                                      taataaCAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTCAAGAGGGCTTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGgtgt         >  2:510850/1‑141 (MQ=255)                                                                                                                                      taataaCAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGgtgt         <  1:724526/141‑1 (MQ=255)                                                                                                                                      taataaCAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGgtgt         >  1:286086/1‑141 (MQ=255)                                                                                                                                           aCAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGAt    >  1:476728/1‑141 (MQ=255)                                                                                                                                             AATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTc  <  1:668980‑M1/141‑1 (MQ=255)                                                                                                                                             |                                                                                                                                             ATGTCGATTTATACCATCCAAAAAGTAATTAATTTAAACTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTC  >  CP000730/2207608‑2207888

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.