New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2484170	79 (1.210)	7 (0.120)	5/230	NT	8.6%	intergenic (+32/+34)	USA300HOU_2347/mqo	hypothetical membrane protein/malate dehydrogenase (acceptor)
	?	CP000730	= 2484183	79 (1.360)					intergenic (+45/+21)	USA300HOU_2347/mqo	hypothetical membrane protein/malate dehydrogenase (acceptor)

TCTAATCATATTCACAATTATCTTCATTGTGGTTTATGTATTAATTTGGATAATTCAATTCTTTAAAAACAAGAACTACGTAGACACTATTAACAAGCAACTGAAACAATTAAAATGATTTTTATTAACCACTAAAAAACGGTAATGTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2484021‑2484170 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacggtaatgtctTTTTTAATGTGATAGACATTACCGTTTTTTAGTGGTTAATAAAAATCATTTTAATTGTTTCAGTTGCTTGTTAATAGTGTCTACGTAGTTCTTGTTTTTAAAGAATTGAATTATCCAAATTAATACATAAACCACAATG  <  CP000730/2484183‑2484045                                                                                                                                                                                                                                                                                                   TCTAATCATATTCACAATTATCTTCATTGTGGTTTATGTATTAATTTGGATAATTCAATTCTTTAAAAACAAGAACTACGTAGACACTATTAACAAGCAACTGAAACAATTAAAATGATTTTTATTAACCACTAAAAAACG                                                                                                                                                      >  1:542711/1‑141 TCTAATCATATTCAAAATTATCTTCAATGTGGAATATTGAGTAATTATGATAATTCAATTCTTTAAAAACAAGAACTACGTAGACACTATTAACAAGCAACTGAAACAATTAAAATGATTTTTATTAACCACTAAAAAACG                                                                                                                                                      <  1:741052/141‑1  CTAATCATATTCACAATTATCTTCATTGTGGTTTATGTATTAATTTGGATAATTCAATTCTTTAAAAACAAGAACTACGTAGACACTATTAACAAGCAACTGAAACAATTAAAATGATTTTTATTAACCACTAAAAAACGG                                                                                                                                                     >  2:213261/1‑141     ATCATATTCACAATTATCTTCATTGTGGTTTATGTATTAATTTGGATAATTCAATTCTTTAAAAACAAGAACTACGTAGACACTATTAACAAGCAACTGAAACAATTAAAATGATTTTTATTAACCACTAAAAAACGGTAA                                                                                                                                                  <  2:759235/141‑1     ATCATATTCACAATTATCTTCATTGTGGTTTATGTATTAATTTGGATAATTCAATTCTTTAAAAACAAGAACTACGTAGACACTATTAACAAGCAACTGAAACAATTAAAATGATTTTTATTAACCACTAAAAAACGGTAA                                                                                                                                                  >  2:125998/1‑141       CATATTCACAATTATCTTCATTGTGGTTTATGTATTAATTTGGATAATTCAATTCTTTAAAAACAAGAACTACGTAGACACTATTAACAAGCAACTGAAACAATTAAAATGATTTTTATTAACCACTAAAAAACGGcctgc                                                                                                                                                >  1:10152/1‑136                       TTCATTGTGGTTTATGTATTAATTTGGATAATTCAATTCTTTAAAAACAAGAACTACGTAGACACTATTAACAAGCAACTGAAACAATTAAAATGATTTTTATTAACCACTAAAAAACGGTAATGTCTTTTTTAATGTGAT                                                                                                                                <  2:432325/141‑1                        TCATTGTGGTTTATGTATTAATTTGGATAATTCACTTCTTTAAAAACAAGAACTACGTAGACACTATTAACAAGCAACTGAAACAATTAAAATGATTTTTATTAACCACTAAAAAACGGTAATGTCTTTTTTAATGTGATA                                                                                                                               <  1:727035/141‑1                        TCATTGTGGTTTATGTATTAATTTGGATAATTCAATTCTTTAAAAACAAGAACTACGTAGACACTATTAACAAGCAACTGAAACAATTAAAATGATTTTTATTAACCACTAAAAAACGGTAATGTCTTTTTTAATGTGATA                                                                                                                               <  2:684520/141‑1                                                                                                      TGAAACAATTAAAATGATTTTTATTAACCACTAAAAAACGGTAATGTCTTTTTTAATGTGATAGACATTAC                                                                                                                       <  2:332335/71‑1                                                                                                      TGAAACAATTAAAATGATTTTTATTAACCACTAAAAAACGGTAATGTCTTTTTTAATGTGATAGACATTAC                                                                                                                       >  1:332335/1‑71                                                                                                          agAATTAAAATTTTTTTTATTAATCACTAAAAAACGGTAATGTCTTTTTTAATGTGATAGACATTACCGTTTTTTAGTGGTTAATAAAAATCATTTTAATTGTTTCAGTTGCTTGTTAATAGTGTCTACGTAGTTCTTGTT                                             <  2:611425/139‑1                                                                                                          ACATTTAAAATTCTTTTTATTACCCACTAAAAAACGGTAATGTCTTTTTTAATACGATACACACTTCCGTTTTTTAGTTCTTAATAACAATCATTTTAATTGTTTCAGTTGCTTGTTAATAGTGTCTACTTAGTTCTTGTT                                             <  2:611282/141‑1                                                                                                                                           ACGGTAATGTCTTTTTTAATGTGATAGACATTACCGTTTTTTAGTGGTTAATAAAAATCATTTTAATTGTTTCAGTTGCTTGTTAATAGTGTCTACGTAGTTCTTGTTTTTAAAGAATTGAATTATCCAAATTAATACATA            >  2:782201/1‑141                                                                                                                                                   GTCTTTTTTAATGTGATAGACATTACCGTTTTTTAGTGGTTAATAAAAATCATTTTAATTGTTTCAGTTGCTTGTTAATAGTGTCTACGTAGTTCTTGTTTTTAAAGAATTGAATTATCCAAATTAATACATAAACCACAA    <  2:126126/141‑1                                                                                                                                                     CTTTTTTAATGTGATAGACATTACCGTTTTTTAGTGGTTAATAAAACTCATTTTAATTGTTTCAGTTGCTTGTTAATAGTGTCTACGTAGTGCCTGTTTTTAAAGAATTGAATTATCCAAATTAATACATAAGCCACAATG  <  2:605603/141‑1                                                                                                                                                                                                                                                                                                   TCTAATCATATTCACAATTATCTTCATTGTGGTTTATGTATTAATTTGGATAATTCAATTCTTTAAAAACAAGAACTACGTAGACACTATTAACAAGCAACTGAAACAATTAAAATGATTTTTATTAACCACTAAAAAACGGTAATGTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2484021‑2484170 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacggtaatgtctTTTTTAATGTGATAGACATTACCGTTTTTTAGTGGTTAATAAAAATCATTTTAATTGTTTCAGTTGCTTGTTAATAGTGTCTACGTAGTTCTTGTTTTTAAAGAATTGAATTATCCAAATTAATACATAAACCACAATG  <  CP000730/2484183‑2484045

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.