| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 2609406 | 77 (1.180) | 5 (0.080) | 4/234 | NT | 6.2% | intergenic (‑236/‑199) | USA300HOU_2471/USA300HOU_2472 | hypothetical protein/hypothetical protein |
| ? | CP000730 | = 2609438 | 81 (1.370) | intergenic (‑268/‑167) | USA300HOU_2471/USA300HOU_2472 | hypothetical protein/hypothetical protein | |||||
GAATTTCCAAATAAATAAAGGGATTTGTGATGTATTTCACAAATTTATCACTATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2609258‑2609406‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagcttctaaTGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTAATGTCTAAAGAACATCTACATTTTATCATATTTTCTGACTTATTAAACTTTTATATAATTAAATATTTCTTAATTTTCCAAAATAGTGATAAATT < CP000730/2609438‑2609299 GAATTTCCAAATAAATAAAGGGATTTGTGATGTATTTCACAAATTTATCACTATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAA < 1:105871/141‑1GAATTTCCAAATAAATAAAGGGATTTGTGATGTATTTCACAAATTTATCACTATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAA > 2:770024/1‑141 TTTCCAAATAAATAAAGGGATTTGTGATGTATTTCACAAATTTATCACTATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCT < 1:260622/141‑1 CAAATAAATAAAGGGATTTGTGATGTATTTCACAAATTTATCACTATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTA > 2:236508/1‑141 TTCACAAATTTATCACTATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTA < 1:479540/141‑1 TTATCACTATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAG < 2:292666/141‑1 ACTATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCT < 1:46064/141‑1 TAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAG > 2:74423/1‑74 TAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAG < 1:74423/74‑1 AAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTAATGTCTAAAGAACATCTACATTTTATCATATTTTCTGACTTATTAAACTTTTATATAATTAAATATTTCTTAATTTTCCAAAAT > 1:162416/1‑141 GCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTAATGTCTAAAGAACATCTACATTTTATCATATTTTCTGACTTATTAAACTTTTATATAATTAAATATTTCTTAATTTTCCAAAATAGTa > 2:542773/1‑140 CTTCTAATGTGATACAGTAACCTCATATTCCGTATCATGTTAGAAGCTTTTAATGTCTAAAGAACATCTACATTTTATCATATTTTCTGACTTATTAAACTTTTATATAATTAAATATTTCTTAATTTTCCAAAATAGTGA < 1:754226/141‑1 CTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTAATGTCTAAAGAACATCTACATTTTATCATATTTTCTGACTTATTAAACTTTTATATAATTAAATATTTCTTAATTTTCCAAAATAGTGA < 2:465808/141‑1 TCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTAATGTCTAAAGAACATCTACATTTTATCATATTTTCTGACTTATTAAACTTTTATATAATTAAATATTTCTTAATTTTCCAAAATAGTGATA > 2:119487/1‑141 TCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTAATGTCTAAAGAACATCTACATTTTATCATATTTTCTGACTTATTAAACTTTTATATAATTAAATATTTCTTAATTTTCCAAAATAGTGATA < 1:545522/141‑1 CTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTAATGTCTAAAGAACATCTACATTTTATCATATTTTCTGACTTATTAAACTTTTATATAATTAAATATTTCTTAATTTTCCAAAATAGTGATAA < 2:638446/141‑1 CTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTAATGTCTAAAGAACATCTACATTTTATCATATTTTCTGACTTATTAAACTTTTATATAATTAAATATTTCTTAATTTTCCAAAATAGTGA > 1:377131/1‑138 CTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTAATGTCTAAAGAACATCTACATTTTATCATATTTTCTGACTTATTAAACTTTTATATAATTAAATATTTCTTAATTTTCCAAAATAGTGA < 2:377131/138‑1 TAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTAATGTCTAAAGAACATCTACATTTTATCATATTTTCTGACTTATTAAACTTTTATATAATTAAATATTTCTTAATTTTCCAAAATAGTGATAAA < 2:58632/141‑1 ATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTAATGTCTAAAGAACATCTACATTTTATCATATTTTCTGACTTATTAAACTTTTATATAATTAAATATTTCTTAATTTTCCAAAATAGTGATAAATT < 1:518020/141‑1 GAATTTCCAAATAAATAAAGGGATTTGTGATGTATTTCACAAATTTATCACTATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2609258‑2609406‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagcttctaaTGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTAATGTCTAAAGAACATCTACATTTTATCATATTTTCTGACTTATTAAACTTTTATATAATTAAATATTTCTTAATTTTCCAAAATAGTGATAAATT < CP000730/2609438‑2609299 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |