| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 2679966 | 53 (0.810) | 4 (0.070) | 3/228 | NT | 7.2% | intergenic (+18/+514) | cbpD/USA300HOU_2537 | possible secretory antigen/hypothetical protein |
| ? | CP000730 | = 2679991 | 56 (0.970) | intergenic (+43/+489) | cbpD/USA300HOU_2537 | possible secretory antigen/hypothetical protein | |||||
ATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2679815‑2679966‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaacttctatcacACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATATAGTTAAAGTTACGTGCTGCCTTTTTGCTTAGTACACGTGTATTGTATTTTAATGGGCGATAAAAGTTGTATTCTGAAACTTT < CP000730/2679991‑2679856 ATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAA > 1:584798/1‑141ATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAA < 1:376971/141‑1 CGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTT > 2:582009/1‑141 GCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTC > 1:590371/1‑141 GTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCAC > 1:391788/1‑141 GTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTC < 1:385856/141‑1 GTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTC < 1:385838/141‑1 CTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAG < 2:446883/141‑1 TTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGT < 1:323833/141‑1 AAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATATAGTTAAAGTTACGTGCTGCCTTTTTGCTTAGTACACGTGTATTGTATTTTAATGGGCGATAAAAGTTGTATTC < 1:194463/141‑1 AAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATATAGTTAAAGTTACGTGCTGCCTTTTTGCTTAGTACACGTGTATTGTATTTTAATGGGCGATAAAAGTTGTATTC > 2:216375/1‑141 AAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATATAGTTAAAGTTACGTGCTGCCTTTTTGCTTAGTACACGTGTATTGTATTTTAATGGGCGATAAAAGTTGTATTCT > 2:140981/1‑141 AACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATATAGTTAAAGTTACGTGCTGCCTTTTTGCTTAGTACACGTGTATTGTATTTTAATGGGCGATAAAAGTTGTATTCTG < 1:133234/141‑1 AACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATATAGTTAAAGTTACGTGCTGCCTTTTTGCTTAGTACACGTGTATTGTATTTTAATGGGCGATAAAAGTTGTATTCTG < 1:444442/141‑1 AACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATATAGTTAAAGTTACGTGCTGCCTTTTTGCTTAGTACACGTGTATTGTATTTTAATGGGCGATAAAAGTTGTATTCTG < 2:586603/141‑1 ACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATATAGTTAAAGTTACGTGCTGCCTTTTTGCTTAGTACACGTGTATTGTATTTTAATGGGCGATAAAAGTTGTATTCTGA < 2:728260/141‑1 CTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATATAGTTAAGGTTACGTGCTGCCGTTTTGCTTAGTACACGTGTATTGTATTTTTATGGGCGATAAAAGTTGTATTCTGAA < 2:214299/141‑1 TATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGTTTAGTATATATAGTTAAAGTTACGTGCTGCCTTTTTGCTTAGTACACGTGTATTGTATTTTAATGTTCGATAAAAGTTGTATTCTGAAACTT > 2:708349/1‑141 ATCAGACGAATACAGGAGATTGAAGTGTTCGTGATAGAAGTTTGTTGATTAGTAAATATAGTTAAAGTTACTTGCTGCCTTTTTGCTTAGTACGCGGGTATTTTATTTTCATGGGCGATAAAAGTTGTATTCTGAAACTTT < 2:675735/141‑1 ATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2679815‑2679966‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaacttctatcacACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATATAGTTAAAGTTACGTGCTGCCTTTTTGCTTAGTACACGTGTATTGTATTTTAATGGGCGATAAAAGTTGTATTCTGAAACTTT < CP000730/2679991‑2679856 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |