New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 267996653 (0.810)4 (0.070) 3/228 NT 7.2% intergenic (+18/+514) cbpD/USA300HOU_2537 possible secretory antigen/hypothetical protein
?CP000730 = 2679991 56 (0.970)intergenic (+43/+489) cbpD/USA300HOU_2537 possible secretory antigen/hypothetical protein

GTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTA  >  CP000730/2679851‑2680130
                                                                                                                                            |                                                                                                                                           
gtaTTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCgt                                                                                                                                             <  2:225709/141‑1 (MQ=255)
gtaTTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCgt                                                                                                                                             >  2:339626/1‑141 (MQ=255)
gtaTTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCgt                                                                                                                                             >  1:370514/1‑141 (MQ=255)
     aaaGTTTCAGAATACAACTTTTATCGCCCATGAAAATAAAATACCCGCGTACTAAGCAAAAAGGCAGCAAGTAACTTTAACTATATTTACTAATCAACAAACTTCTATCACGAACACTTCAATCTCCTGTATTCGTctgat                                                                                                                                        <  2:675735‑M2/141‑6 (MQ=255)
      aaGTTTCAGAATACAACTTTTATCGAACATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATATACTAAACAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTgtgata                                                                                                                                       >  2:708349‑M2/1‑135 (MQ=255)
          ttCAGAATACAACTTTTATCGCCCATAAAAATACAATACACGTGTACTAAGCAAAACGGCAGCACGTAACCTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTgtgatagaag                                                                                                                                   <  2:214299‑M2/141‑11 (MQ=255)
           tCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTgtgatagaagt                                                                                                                                  <  2:728260‑M2/141‑12 (MQ=255)
            cAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTgtgatagaagtt                                                                                                                                 <  1:444442‑M2/141‑13 (MQ=255)
            cAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTgtgatagaagtt                                                                                                                                 <  1:133234‑M2/141‑13 (MQ=255)
            cAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTgtgatagaagtt                                                                                                                                 <  2:586603‑M2/141‑13 (MQ=255)
             aGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTgtgatagaagttt                                                                                                                                >  2:140981‑M2/1‑128 (MQ=255)
              gAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTgtgatagaagtttt                                                                                                                               <  1:194463‑M2/141‑15 (MQ=255)
              gAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTgtgatagaagtttt                                                                                                                               >  2:216375‑M2/1‑127 (MQ=255)
                          tATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGaaa                                                                                                                   >  1:531507/1‑141 (MQ=255)
                          tATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGaaa                                                                                                                   >  1:255010/1‑141 (MQ=255)
                             cGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAatta                                                                                                                >  2:519711/1‑141 (MQ=255)
                               cccATTANAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAActtata                                                                                                              <  2:590382/141‑1 (MQ=255)
                                   ttAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAattatattat                                                                                                          <  2:111248/141‑1 (MQ=255)
                                    tAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCTCGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCCCGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATattatt                                                                                                         <  2:330833/141‑1 (MQ=255)
                                         tacaatacaCGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTc                                                                                                    >  1:278568/1‑141 (MQ=255)
                                         tacaatacaCGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTc                                                                                                    >  2:189846/1‑141 (MQ=255)
                                           caatacaCGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTa                                                                                                  >  1:405695/1‑141 (MQ=255)
                                             atacaCGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACa                                                                                                <  1:322729/141‑1 (MQ=255)
                                                cacGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAAt                                                                                             >  1:299088/1‑141 (MQ=255)
                                                  cGTGTTCTAAGCCATAACCCAGCCCGTAACCTTAACTATATTTAATCATCAAAAATCTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTCCTTCTTCAAtttc                                                                                           <  2:768055/141‑2 (MQ=18)
                                                   gtgtACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTc                                                                                          <  2:637019/141‑1 (MQ=255)
                                                     gtACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTCTTTTATGAAATTATATTATTACTTCTACAAATTTCaa                                                                                        >  1:35294/1‑141 (MQ=255)
                                                      tACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAANTTTCaaa                                                                                       >  2:591385/1‑141 (MQ=255)
                                                      tACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCaaa                                                                                       <  1:590961/141‑1 (MQ=255)
                                                                 aaGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAAtt                                                                            >  1:113882/1‑141 (MQ=255)
                                                                    gcagcaCGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGaa                                                                         >  2:503165/1‑141 (MQ=255)
                                                                      agcaCGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATGTCAAATTGCCGTAATTGAACg                                                                       >  2:32779/1‑141 (MQ=255)
                                                                       gcaCGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGt                                                                      >  2:506762/1‑141 (MQ=255)
                                                                       gcaCGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGt                                                                      <  2:499677/141‑1 (MQ=255)
                                                                       gcaCGTAACATTAACTATATTTACTAATGAAAATACTTCTATCACGAACGCTTCAATTTGCTGTAAGCGTGGGATAGGAGTGTGTTTTGTATTAAATAATATTATTACTTCTACACATTTGAAAGTGCCGTAATTGAACgg                                                                      >  2:136026/1‑140 (MQ=21)
                                                                        caCGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGta                                                                     <  2:693000/141‑1 (MQ=255)
                                                                        caCGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGta                                                                     <  1:495264/141‑1 (MQ=255)
                                                                        caCGTAACTTTAACTATAATTACTAAACAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGta                                                                     <  2:693075/141‑1 (MQ=255)
                                                                          cGTAGCTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGtata                                                                   <  1:730661/141‑1 (MQ=255)
                                                                          cGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGtata                                                                   >  1:485140/1‑141 (MQ=255)
                                                                                    aCTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATttcttcttc                                                         >  1:704727/1‑141 (MQ=255)
                                                                                      tataTTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCaa                                                       >  1:694894/1‑141 (MQ=255)
                                                                                      tataTTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCaa                                                       <  2:18594/141‑1 (MQ=255)
                                                                                        tatTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACt                                                     >  2:152517/1‑141 (MQ=255)
                                                                                             aCTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTgtgatagaagttttttgattagtaaatatagttaaagttacgtgctgcctttttgcttagtacacgtgtattgtattttaatgggcgataaaa                                                <  1:323833‑M2/141‑94 (MQ=255)
                                                                                              cTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTgtgatagaagttttttgattagtaaatatagttaaagttacgtgctgcctttttgcttagtacacgtgtattgtattttaatgggcgataaaag                                               <  2:446883‑M2/141‑95 (MQ=255)
                                                                                              cTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTattatt                                               <  1:693166/141‑1 (MQ=255)
                                                                                                  tCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCAt                                           >  1:711799/1‑141 (MQ=255)
                                                                                                    aaaaaaCTTCTATCACGAACGCTTCAATTTCCCGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCt                                         >  2:475578/1‑141 (MQ=255)
                                                                                                        aaCTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAg                                     <  1:755023/141‑1 (MQ=255)
                                                                                                         aCTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGc                                    <  1:351693/141‑1 (MQ=255)
                                                                                                         aCTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGc                                    <  1:619004/141‑1 (MQ=255)
                                                                                                         aCTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGc                                    <  1:476332/141‑1 (MQ=255)
                                                                                                          cTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCa                                   >  2:744991/1‑141 (MQ=255)
                                                                                                              tATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAAt                               >  2:401056/1‑141 (MQ=255)
                                                                                                              tATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAAt                               >  1:38314/1‑141 (MQ=255)
                                                                                                               aTCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAGATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATc                              <  2:625136/141‑1 (MQ=255)
                                                                                                                tCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTATTTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATTATCt                             >  1:280472/1‑141 (MQ=255)
                                                                                                                  ccGAACTCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCtat                           <  2:749535/140‑1 (MQ=255)
                                                                                                                    gAACGCTTCAATTTCCTGTATGCGTgtgatagaagttttttgattagtaaatatagttaaagttacgtgctgcctttttgcttagtacacgtgtattgtattttaatgggcgataaaagttgtattctgaaactttaatac                         <  1:385838‑M2/141‑117 (MQ=255)
                                                                                                                    gAACGCTTCAATTTCCTGTATGCGTgtgatagaagttttttgattagtaaatatagttaaagttacgtgctgcctttttgcttagtacacgtgtattgtattttaatgggcgataaaagttgtattctgaaactttaatac                         <  1:385856‑M2/141‑117 (MQ=255)
                                                                                                                      aCGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCtatatat                       <  2:104434/141‑1 (MQ=255)
                                                                                                                        gCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGACATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATaa                     >  2:66293/1‑141 (MQ=255)
                                                                                                                           tCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAAt                  >  1:486107/1‑141 (MQ=255)
                                                                                                                           tCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAAt                  >  1:244134/1‑141 (MQ=255)
                                                                                                                             aaTTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAAttt                <  1:547746/141‑1 (MQ=255)
                                                                                                                                ttCCTGTATGCGTGTGATAGAAGTTTTTATTTTATTAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTAt             <  1:706397/141‑1 (MQ=255)
                                                                                                                                 tCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATg            <  2:197781/141‑1 (MQ=255)
                                                                                                                                 tCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATg            <  2:70252/141‑1 (MQ=255)
                                                                                                                                  ccTGTATGCGTGTGACAGCAATACTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGc           <  1:6971/141‑1 (MQ=255)
                                                                                                                                   cTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCt          >  2:776309/1‑141 (MQ=255)
                                                                                                                                   cTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCt          >  1:190386/1‑141 (MQ=255)
                                                                                                                                       aTGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCtatta      >  1:235211/1‑141 (MQ=255)
                                                                                                                                         gCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTattatt    <  1:591385/141‑1 (MQ=255)
                                                                                                                                          cGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTAttt   >  1:740589/1‑141 (MQ=255)
                                                                                                                                           gtgtGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTa  <  1:586603/141‑1 (MQ=255)
                                                                                                                                           gtgtGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTa  <  2:405695/141‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                           
GTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTA  >  CP000730/2679851‑2680130

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.