| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 2713224 | 72 (1.100) | 4 (0.070) | 4/240 | NT | 5.5% | intergenic (‑322/+286) | isaA/USA300HOU_2565 | immunodominant antigen A/hypothetical membrane protein |
| ? | CP000730 | = 2713244 | 70 (1.150) | intergenic (‑342/+266) | isaA/USA300HOU_2565 | immunodominant antigen A/hypothetical membrane protein | |||||
TGTTATTTGTAATGTTGAAATATGGCTGTTTTATACTGTAATGTGAAATATGTGCCCTTTAGAATCCAATCAACCCTTGAAATAGTCTTTAACACATAAGATTTTTACTATATTTAGCTCAACTATTACAGCTTTCGTAATATTACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2713077‑2713224‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atattacagCTATGTAACAAAAATACAATCTGTAATATTACGAAAGCTGTAATAGTTGAGCTAAATATAGTAAAAATCTTATGTGTTAAAGACTATTTCAAGGGTTGATTGGATTCTAAAGGGCACATATTTCACATTACAGTATAAAA < CP000730/2713244‑2713105 TGTTATTTGTAATGTTGAAATATGGCTGTTTTATACTGTAATGTGAAATATGTGCCCTTTAGAATCCAATCAACCCTTGAAATAGTCTTTAACACATAAGATTTTTACTATATTTAGCTCAACTATTACAGCTTTCGTAAT > 2:304933/1‑141 ATTTGTAATGTTGAAATATGGCTGTTTTATACTGTAATGTGAAATATGTGCCCTTTAGAATCCAATCAACCCTTGAAATAGTCTTTAACACATAAGATTTTTACTATATTTAGCTCAACTATTACAGCTTTCGTAATATTA > 2:655818/1‑141 GTTGAAATATGGCTGTTTTATACTGTAATGTGAAATATGTGCCCTTTAGAATCCAATCAACCCTTGAAATAGTCTTTAACACATAAGATTTTTACTATATTTAGCTCAACTATTACAGCTTTCGTAATATTACAGCTtgta > 2:568377/1‑137 ACTGTAATGTGAAATATGTGCCCTTTAGAATCCAATCAACCCTTGAAATAGTCTTTAACACATAAGATTTTTACTATATTTAGCTCAACTATTACAGCTTTCGTAATATTACAGCTATGTAACAAAAATACAATCTGTAAT < 1:560804/141‑1 TGAAATAGTCTTTAACACATAAGATTTTTACTATATTTAGCTCAACTATTACAGCTTTCGTAATATTACAGCTATGTAACAAAAATACAATCTGTAATATTACGAAAGCTGTAATAGTTGAGCTAAATATAGTAAAAATCT > 2:225670/1‑141 AAATAGTCTTTAACACATTAGATTTTTACTATATTTAGCTCAACTATTACAGCTTTCGTAATATTACAGCTATGTAACAAAAATACAATCTGTAATATTACGAAAGCTGTAATAGTTGAGCTAAATATAGTAAAAATCTTA < 1:260540/141‑1 AGATTTTTACTATATTTAGCTCAACTATTACAGCTTTCGTAATATTACAGCTATGTAACAAAAATACAATCTGTAATATTACGATAGCTGTAATAGTTGAGCTAAATATAGTAAAAATCTTATGTGTTAAAGACTATTTCA < 1:225670/141‑1 ATATTACAGCTATGTAACAAAAATACAATCTGTAATATTACGAAAGCTGTAATAGTTGAGCTAAATATAGTAAAAATCTTATGTGTTAAAGACTATTTCAAGGGTTGATTGGATTCTAAAGGGCACATATTTCACATTACA > 2:574818/1‑141 ATATTACAGCTATGTAACAAAAATACAATCTGTAATATTACGAAAGCTGTAATAGTTGAGCTAAATATAGTAAAAATCTTATGTGTTAAAGACTATTTCAAGGGTTGATTGGATTCTAAAGGGCACATATTTCACATTACA > 2:373986/1‑141 ATATTACAGCTATGTAACAAAAATACAATCTGTAATATTACGAAAGCTGTAATAGTTGAGCTAAATATAGTAAAAATCTTATGTGTTAAAGACTATTTCAAGGGTTGATTGGATTCTAAAGGGCACATATTTCACATTACA > 2:272358/1‑141 TTACAGCTATGTAACAAAAATACAATCTGTAATATTACGAAAGCTGTAATAGTTGAGCTAAATATAGTAAAAATCTTATGTGTTAAAGACTATTTCAAGGGTTGATTGGATTCTAAAGGGCACATATTTCACATTACAGTA > 2:780518/1‑141 TTACAGCTATGTAACAAAAATACAATCTGTAATATTACGAAAGCTGTAATAGTTGAGCTAAATATAGTAAAAATCTTATGTGTTAAAGACTATTTCAAGGGTTGATTGGATTCTAAAGGGCACATATTTCACATTACAGTA > 2:613753/1‑141 TACAGCTATGTAACAAAAATACAATCTGTAATATTACGAAAGCTGTAATAGTTGAGCTAAATATAGTAAAAATCTTATGTGTTAAAGACTATTTCAAGGGTTGATTGGATTCTAAAGGGCACATATTTCACATTACAGTAT < 1:168022/141‑1 GCTATGTAACAAAAATACAATCTGTAATATTACGAAAGCTGTAATAGTTGAGCTAAATATAGTAAAAATCTTATGTGTTAAAGACTATTTCAAGGGTTGATTGGATTCTAAAGGGCACATATTTCACATTACAGTATAAAA > 1:360844/1‑141 TGTTATTTGTAATGTTGAAATATGGCTGTTTTATACTGTAATGTGAAATATGTGCCCTTTAGAATCCAATCAACCCTTGAAATAGTCTTTAACACATAAGATTTTTACTATATTTAGCTCAACTATTACAGCTTTCGTAATATTACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2713077‑2713224‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atattacagCTATGTAACAAAAATACAATCTGTAATATTACGAAAGCTGTAATAGTTGAGCTAAATATAGTAAAAATCTTATGTGTTAAAGACTATTTCAAGGGTTGATTGGATTCTAAAGGGCACATATTTCACATTACAGTATAAAA < CP000730/2713244‑2713105 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |