| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 2863041 = | 72 (1.100) | 4 (0.070) | 4/240 | NT | 5.6% | intergenic (+11/+49) | USA300HOU_2706/USA300HOU_2707 | integrase/hypothetical protein |
| ? | CP000730 | 2863075 = | 68 (1.120) | intergenic (+45/+15) | USA300HOU_2706/USA300HOU_2707 | integrase/hypothetical protein | |||||
ACATTAGCAATGCTGTTATAGATATCATCAGTGTATCCAAAGATACTCTTGATTATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2863187‑2863041‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggcttttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCTATAACAGCATTGCTAATGTAGAATATATTTTCTTGATTATAGAAT > CP000730/2863075‑2863213 ACATTAGCAATGCTGTTATAGATATCATCAGTGTATCCAAAGATACTCTTGATTATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACG < 1:700540/141‑1ACATTAGCAATGCTGTTATAGATATCATCAGTGTATCCAAAGATACTCTTGATTATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACG < 2:65321/141‑1 CATTAGCAATGCTGTTATAGATATCATCAGTGTATCCAAAGATACTCTTGATTATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGG < 1:555709/141‑1 CATTAGCAATGCTGTTATAGATATCATCAGTGTATCCAAAGATACTCTTGATTATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGG < 2:419928/141‑1 CATTAGCAATGCTGTTATAGATATCATCAGTGTATCCAAAGATACTCTTGATTATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTACTGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGG < 1:568477/141‑1 ATTAGCAATGCTGTTATAGATATCATCAGTGTATCCAAAGATACTCTTGATTATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGGC < 2:122385/141‑1 AGCAATGCTGTTATAGATATCATCAGTGTATCCAAAGATACTCTTGATTATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGGCTTT < 1:747554/141‑1 TATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCTA > 2:471212/1‑141 GCCGTAGTTTCGAAGAGACCAACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATA > 2:676491/1‑88 GCCGTAGTTTCGAAGAGACCAACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATA < 1:676491/88‑1 TTCGAAGCGACCAACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCTATAACAGCATTGCTAATGTAactct > 2:349992/1‑136 ACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTGTCTTTGGATAAAATGATGATAACTATAACAGCATTGCTAATGTAGAATATATTTTCTTGATT > 2:612791/1‑141 TTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCTATAACAGCATTGCTAATGTAGAATATATTTTCTTGATTATAGAAT < 2:356302/141‑1 TTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCTATAACAGCATTGCTAATGTAGAATATATTTTCTTGACTATAGAAT < 1:579758/141‑1 ACATTAGCAATGCTGTTATAGATATCATCAGTGTATCCAAAGATACTCTTGATTATATAAAGTCAGAATTCAATGATCACTGTGCTTCGCCATACTGATTTTATAGCACAGAGAAAAGCCGTAGTTTCGAAGAGACCAACGGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2863187‑2863041‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggcttttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCTATAACAGCATTGCTAATGTAGAATATATTTTCTTGATTATAGAAT > CP000730/2863075‑2863213 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |