New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2863041 =	72 (1.100)	4 (0.070)	4/240	NT	5.6%	intergenic (+11/+49)	USA300HOU_2706/USA300HOU_2707	integrase/hypothetical protein
	?	CP000730	2863075 =	68 (1.120)					intergenic (+45/+15)	USA300HOU_2706/USA300HOU_2707	integrase/hypothetical protein

CATATCATCAGTGTTGCTCAAAAAATCAATCATCGTCCTAGAAAATCTTTAGGTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCTATAACAGCATTG  >  CP000730/2862902‑2863180                                                                                                                                            |                                                                                                                                            catatcatCAGTGTTGCTCAAAAAATCAATCATCGTCCTAGAAAATCTTTAGGTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATaaaa                                                                                                                                            >  2:483003/1‑141 (MQ=32) attctatagtcaagaaaatatattctacattagcaatgctgttatagatatcatcagtgtatccaaagatactcttgattatataaagtcagaattcaatgatcactgtgcttcgccatactgattttatagcacagagaa                                                                                                                                            <  1:579758‑M1/2‑1 (MQ=255) attctataatcaagaaaatatattctacattagcaatgctgttatagatatcatcagtgtatccaaagatactcttgattatataaagtcagaattcaatgatcactgtgcttcgccatactgattttatagcacagagaa                                                                                                                                            <  2:356302‑M1/2‑1 (MQ=255)     tcatcaGTGTTGCTCAAAAAATCAATCATCGTCCTAGAAAATCTTTAGGTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGc                                                                                                                                        >  1:76986/1‑141 (MQ=33)     tcatcaGTGTTGCTCAAAAAATCAATCATCGTCCTAGAAAATCTTTAGGTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGc                                                                                                                                        >  2:774589/1‑141 (MQ=33)       atcaGTGTTGCTCAAAAAATCAATCATCGTCCTAGAAAATCTTTAGGTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCg                                                                                                                                      >  2:645419/1‑141 (MQ=34)        tcaGTGTTGCTCAAAAAATCAATCATCGTCCTAGAAAATCTTTAGGTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGt                                                                                                                                     <  1:267782/141‑1 (MQ=35)        aatcaagaaaatatattctacattagcaatgctgttatagttatcatcattttatccaaagacactcttgattatataaagtcagaattcaatgatcactgtgcttcgccatactgattttatagcacagagAAAAGCCGt                                                                                                                                     >  2:612791‑M1/133‑141 (MQ=255)         caGTGTTGCTCAAAAAATCAATCATCGTCCTAGAAAATCTTTAGGTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGtt                                                                                                                                    >  1:523446/1‑141 (MQ=37)         caGTGTTGCTCAAAAAATCAATCATCGTCCTAGAAAATCTTTAGGTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGtt                                                                                                                                    <  1:431141/141‑1 (MQ=37)            tgtTGCTCAAAAAATCAATCATCGTCCTAGAAAATCTTTAGGTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGt                                                                                                                                 >  2:348519/1‑141 (MQ=39)              ttGCTCAAAAAATCAATCATCGTCCTAGAAAATCTTTAGGTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGtct                                                                                                                               <  2:512201/141‑1 (MQ=40)                 cTCAAAAAATCAATCATCGTCCTAGAAAATCTTTAGGTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCtt                                                                                                                            <  1:643605/141‑1 (MQ=255)                   cAAAAAATCAATCATCGTCCTAGAAAATCTTTAGGTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCg                                                                                                                          <  2:93084/141‑1 (MQ=255)                    aaaaaaTCAATCATCGTCCTAGAAAATCTTTAGGTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGtagtttcgaagag                                                                                                                         <  2:306413/141‑13 (MQ=255)                     agagttacattagcaatgctgttatagatatcatcagtgtatccaaagatactcttgattatataaagtcagaattcaatgatcactgtgcttcgccatactgattttatagcacagagAAAAGCCGTTGGTCGCTTCGaa                                                                                                                        >  2:349992‑M1/120‑141 (MQ=255)                        aagaaataatCGGGCTAGAAAACCTTTAGCTTATAGGACGCTCTTGGGAGCACTCATGTGGCGCATAGACGATCATAAAATTTTCCAGCGCCTTTTGACACTCGAAAGAAAAAAAAAAAAGCCGTTGGTCTCTTCGAAACt                                                                                                                     <  2:421607/137‑1 (MQ=255)                           caatcaTCGTCCTAGAAAATCTTTAGGTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACg                                                                                                                  >  2:250282/1‑141 (MQ=255)                           caatcaTCGTCCTAGAAAATCTTTAGGTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACg                                                                                                                  >  2:662605/1‑141 (MQ=255)                            aatcaTCGTCCTAGAAAATCTTTAGGTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACgg                                                                                                                 <  1:109235/141‑1 (MQ=255)                                    tCCTAGAAAATCTTTAGGTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTtctc                                                                                                         <  1:349885/141‑1 (MQ=255)                                     ccTAGAAAATCTTTAGGTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTctct                                                                                                        <  1:75565/141‑1 (MQ=255)                                         gAAATTCTTTATGTTATATAACACCATTGTAAGTATTTATGAGTTTCATCGAAGATGATAAACTTTTCCAGCTTAATTTGACAGTCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCGTTTCTCTGTGc                                                                                                    <  2:132759/141‑1 (MQ=18)                                         gAAAATCTTTAGGTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGc                                                                                                    <  1:292201/141‑1 (MQ=255)                                          aaaaTCTTTAGGTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCt                                                                                                   >  2:203486/1‑141 (MQ=255)                                          aaaaTCTTTAGGTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCt                                                                                                   >  2:529643/1‑141 (MQ=255)                                          aaaaTCTTTAGGTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCt                                                                                                   <  2:755536/141‑1 (MQ=255)                                          aaaaTCTTTAGGTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCt                                                                                                   >  2:330100/1‑141 (MQ=255)                                          aaaaTCTTTAGGTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCt                                                                                                   <  1:58268/141‑1 (MQ=255)                                          aaaaTCTTTAGGTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCt                                                                                                   <  1:770141/141‑1 (MQ=255)                                          aaaaTCTTTAGGTTATAGAACACCATTGGAAGTATTTATGAGTGTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTGCTCTGTGCt                                                                                                   <  2:715747/141‑1 (MQ=255)                                             tagatatcatcagtgtatccaaagatactcttgattatataaagtcagaattcaatgatcactgtgcttcgccatactgattttatagcacagagAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCtata                                                                                                >  2:471212‑M1/96‑141 (MQ=255)                                                 ttAGGTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAAt                                                                                            >  2:575227/1‑141 (MQ=255)                                                    ggTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAg                                                                                         <  2:629941/141‑1 (MQ=255)                                                      ttATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTa                                                                                       >  1:453305/1‑141 (MQ=255)                                                          aGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGc                                                                                   >  2:541799/1‑141 (MQ=255)                                                          aGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGc                                                                                   <  1:526803/141‑1 (MQ=255)                                                              cacCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAg                                                                               >  1:748914/1‑141 (MQ=255)                                                                 cATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTTTGCTATAAAATCAGTATGGCGAAGcac                                                                            <  2:512305/141‑1 (MQ=255)                                                                 cATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGcac                                                                            <  2:543960/141‑1 (MQ=255)                                                                  aTTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGcaca                                                                           >  2:595038/1‑141 (MQ=255)                                                                  aTTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGcaca                                                                           <  1:25186/141‑1 (MQ=255)                                                                    tGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGt                                                                         <  1:325351/141‑1 (MQ=255)                                                                     ggAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTg                                                                        >  2:738578/1‑141 (MQ=255)                                                                     ggAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTg                                                                        >  1:502858/1‑141 (MQ=255)                                                                        aGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATc                                                                     >  2:282994/1‑141 (MQ=255)                                                                           aTTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCAtt                                                                  <  2:286912/141‑1 (MQ=255)                                                                              tATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGTTTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGaa                                                               <  1:149999/141‑1 (MQ=255)                                                                              tATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGaa                                                               >  1:781249/1‑141 (MQ=255)                                                                               aTGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTACTTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAAt                                                              <  2:263871/141‑1 (MQ=255)                                                                                  tataaagtcagaattcaatgatcactgtgcttcgccatactgattttatagcacagagAAAAGCCGTTGGTCTCTTCGAAACTACGGc                                                                                                                <  1:676491‑M1/30‑1 (MQ=255)                                                                                  tataaagtcagaattcaatgatcactgtgcttcgccatactgattttatagcacagagAAAAGCCGTTGGTCTCTTCGAAACTACGGc                                                                                                                >  2:676491‑M1/59‑88 (MQ=255)                                                                                     ttCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGAc                                                        >  1:513789/1‑141 (MQ=255)                                                                                       cATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATAGAGAAGCACAGTGATCATAGAATTCTGACtt                                                      >  1:158915/1‑141 (MQ=255)                                                                                         tCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTta                                                    >  2:579758/1‑141 (MQ=255)                                                                                         tCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTta                                                    <  2:49245/141‑1 (MQ=255)                                                                                         tCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTta                                                    <  2:134566/141‑1 (MQ=255)                                                                                             aGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTtatata                                                >  2:4516/1‑141 (MQ=255)                                                                                                  atAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCaa                                           >  1:119465/1‑141 (MQ=255)                                                                                                    aaaCTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAaga                                         >  2:689581/1‑141 (MQ=255)                                                                                                    aaaCTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAaga                                         <  2:235126/141‑1 (MQ=255)                                                                                                     aaCTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAagag                                        <  1:638059/141‑1 (MQ=255)                                                                                                          gTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCt                                   >  1:503027/1‑141 (MQ=255)                                                                                                          gTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCt                                   >  1:363470/1‑141 (MQ=255)                                                                                                           tCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCtt                                  <  1:163736/141‑1 (MQ=255)                                                                                                           tCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCtt                                  <  1:154962/141‑1 (MQ=255)                                                                                                             cAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATccaaa                                <  1:42428/141‑5 (MQ=255)                                                                                                              aGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTgg                               <  2:508208/141‑1 (MQ=255)                                                                                                              aGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTgg                               <  2:508194/141‑1 (MQ=255)                                                                                                               gCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGa                              <  1:160536/141‑1 (MQ=255)                                                                                                               gCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGa                              >  2:27509/1‑141 (MQ=255)                                                                                                               gCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGa                              <  2:456309/141‑1 (MQ=255)                                                                                                                    aTTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGGCTTTATATAATCAAGAGTATCTTTGGATacac                         <  2:67671/141‑1 (MQ=255)                                                                                                                     tttGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACt                        <  1:458203/141‑1 (MQ=255)                                                                                                                      ttGACAATCTAAAGATTTATACAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACtg                       <  2:267107/141‑1 (MQ=255)                                                                                                                      ttGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACtg                       >  1:8757/1‑141 (MQ=255)                                                                                                                       tGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACtga                      >  2:236650/1‑141 (MQ=255)                                                                                                                            aTCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGata                 >  1:558776/1‑141 (MQ=255)                                                                                                                               tAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCt              <  2:244013/141‑1 (MQ=255)                                                                                                                                  aGATTTATAAAAAAGCCGTTGGTCTCTTCGAATCTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCtata           <  1:321976/141‑1 (MQ=255)                                                                                                                                         taAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCTATAACAGCAt    >  1:316468/1‑141 (MQ=255)                                                                                                                                         taAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCTATAACAGCAt    >  1:146976/1‑141 (MQ=255)                                                                                                                                          aaaaaaGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCTATAACAGCAtt   <  1:2204/141‑1 (MQ=255)                                                                                                                                           aaaaaGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCTATAACAGCATTg  <  2:299449/141‑1 (MQ=255)                                                                                                                                            |                                                                                                                                            CATATCATCAGTGTTGCTCAAAAAATCAATCATCGTCCTAGAAAATCTTTAGGTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCTATAACAGCATTG  >  CP000730/2862902‑2863180

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.