New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2863041 =	72 (1.100)	4 (0.070)	4/240	NT	5.6%	intergenic (+11/+49)	USA300HOU_2706/USA300HOU_2707	integrase/hypothetical protein
	?	CP000730	2863075 =	68 (1.120)					intergenic (+45/+15)	USA300HOU_2706/USA300HOU_2707	integrase/hypothetical protein

TCCTAGAAAATCTTTAGGTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCTATAACAGCATTGCTAATGTAGAATATATTTTCTTGATTATAGAAT  >  CP000730/2862937‑2863213                                                                                                                                           |                                                                                                                                           tCCTAGAAAATCTTTAGGTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTtctc                                                                                                                                          <  1:349885/141‑1 (MQ=255)  ccTAGAAAATCTTTAGGTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTctct                                                                                                                                         <  1:75565/141‑1 (MQ=255)      gAAATTCTTTATGTTATATAACACCATTGTAAGTATTTATGAGTTTCATCGAAGATGATAAACTTTTCCAGCTTAATTTGACAGTCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCGTTTCTCTGTGc                                                                                                                                     <  2:132759/141‑1 (MQ=18)      gAAAATCTTTAGGTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGc                                                                                                                                     <  1:292201/141‑1 (MQ=255)       aaaaTCTTTAGGTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCt                                                                                                                                    <  2:755536/141‑1 (MQ=255)       aaaaTCTTTAGGTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCt                                                                                                                                    >  2:203486/1‑141 (MQ=255)       aaaaTCTTTAGGTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCt                                                                                                                                    <  1:770141/141‑1 (MQ=255)       aaaaTCTTTAGGTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCt                                                                                                                                    <  1:58268/141‑1 (MQ=255)       aaaaTCTTTAGGTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCt                                                                                                                                    >  2:330100/1‑141 (MQ=255)       aaaaTCTTTAGGTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCt                                                                                                                                    >  2:529643/1‑141 (MQ=255)       aaaaTCTTTAGGTTATAGAACACCATTGGAAGTATTTATGAGTGTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTGCTCTGTGCt                                                                                                                                    <  2:715747/141‑1 (MQ=255)          tagatatcatcagtgtatccaaagatactcttgattatataaagtcagaattcaatgatcactgtgcttcgccatactgattttatagcacagagAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCtata                                                                                                                                 >  2:471212‑M1/96‑141 (MQ=255)              ttAGGTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAAt                                                                                                                             >  2:575227/1‑141 (MQ=255)                 ggTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAg                                                                                                                          <  2:629941/141‑1 (MQ=255)                   ttATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTa                                                                                                                        >  1:453305/1‑141 (MQ=255)                       aGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGc                                                                                                                    <  1:526803/141‑1 (MQ=255)                       aGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGc                                                                                                                    >  2:541799/1‑141 (MQ=255)                           cacCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAg                                                                                                                >  1:748914/1‑141 (MQ=255)                              cATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTTTGCTATAAAATCAGTATGGCGAAGcac                                                                                                             <  2:512305/141‑1 (MQ=255)                              cATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGcac                                                                                                             <  2:543960/141‑1 (MQ=255)                               aTTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGcaca                                                                                                            <  1:25186/141‑1 (MQ=255)                               aTTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGcaca                                                                                                            >  2:595038/1‑141 (MQ=255)                                 tGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGt                                                                                                          <  1:325351/141‑1 (MQ=255)                                  ggAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTg                                                                                                         >  2:738578/1‑141 (MQ=255)                                  ggAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTg                                                                                                         >  1:502858/1‑141 (MQ=255)                                     aGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATc                                                                                                      >  2:282994/1‑141 (MQ=255)                                        aTTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCAtt                                                                                                   <  2:286912/141‑1 (MQ=255)                                           tATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGTTTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGaa                                                                                                <  1:149999/141‑1 (MQ=255)                                           tATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGaa                                                                                                >  1:781249/1‑141 (MQ=255)                                            aTGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTACTTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAAt                                                                                               <  2:263871/141‑1 (MQ=255)                                                  ttCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGAc                                                                                         >  1:513789/1‑141 (MQ=255)                                                    cATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATAGAGAAGCACAGTGATCATAGAATTCTGACtt                                                                                       >  1:158915/1‑141 (MQ=255)                                                      tCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTta                                                                                     <  2:134566/141‑1 (MQ=255)                                                      tCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTta                                                                                     >  2:579758/1‑141 (MQ=255)                                                      tCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTta                                                                                     <  2:49245/141‑1 (MQ=255)                                                          aGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTtatata                                                                                 >  2:4516/1‑141 (MQ=255)                                                               atAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCaa                                                                            >  1:119465/1‑141 (MQ=255)                                                                 aaaCTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAaga                                                                          <  2:235126/141‑1 (MQ=255)                                                                 aaaCTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAaga                                                                          >  2:689581/1‑141 (MQ=255)                                                                  aaCTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAagag                                                                         <  1:638059/141‑1 (MQ=255)                                                                       gTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCt                                                                    >  1:363470/1‑141 (MQ=255)                                                                       gTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCt                                                                    >  1:503027/1‑141 (MQ=255)                                                                        tCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCtt                                                                   <  1:163736/141‑1 (MQ=255)                                                                        tCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCtt                                                                   <  1:154962/141‑1 (MQ=255)                                                                          cAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATccaaa                                                                 <  1:42428/141‑5 (MQ=255)                                                                           aGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTgg                                                                <  2:508208/141‑1 (MQ=255)                                                                           aGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTgg                                                                <  2:508194/141‑1 (MQ=255)                                                                            gCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGa                                                               <  1:160536/141‑1 (MQ=255)                                                                            gCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGa                                                               <  2:456309/141‑1 (MQ=255)                                                                            gCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGa                                                               >  2:27509/1‑141 (MQ=255)                                                                                 aTTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGGCTTTATATAATCAAGAGTATCTTTGGATacac                                                          <  2:67671/141‑1 (MQ=255)                                                                                  tttGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACt                                                         <  1:458203/141‑1 (MQ=255)                                                                                   ttGACAATCTAAAGATTTATACAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACtg                                                        <  2:267107/141‑1 (MQ=255)                                                                                   ttGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACtg                                                        >  1:8757/1‑141 (MQ=255)                                                                                    tGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACtga                                                       >  2:236650/1‑141 (MQ=255)                                                                                         aTCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGata                                                  >  1:558776/1‑141 (MQ=255)                                                                                            tAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCt                                               <  2:244013/141‑1 (MQ=255)                                                                                             tatagcacagagaaaagccgtagtttcgaagagaccaacggcttttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCta                                              >  2:471212‑M2/47‑141 (MQ=255)                                                                                               aGATTTATAAAAAAGCCGTTGGTCTCTTCGAATCTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCtata                                            <  1:321976/141‑1 (MQ=255)                                                                                                      taAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCTATAACAGCAt                                     >  1:316468/1‑141 (MQ=255)                                                                                                      taAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCTATAACAGCAt                                     >  1:146976/1‑141 (MQ=255)                                                                                                       aaaaaaGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCTATAACAGCAtt                                    <  1:2204/141‑1 (MQ=255)                                                                                                        aaaaaGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCTATAACAGCATTg                                   <  2:299449/141‑1 (MQ=255)                                                                                                          AAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCTATAACAGCATTGCt                                 <  1:747554‑M1/141‑1 (MQ=255)                                                                                                             gccgtagtttcgaagagaccaacggcttttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTtata                                                                                   <  1:676491‑M2/58‑1 (MQ=255)                                                                                                             gccgtagtttcgaagagaccaacggcttttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTtata                                                                                   >  2:676491‑M2/31‑88 (MQ=255)                                                                                                             GCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCTATAACAGCATTGCTAAt                              <  2:122385‑M1/141‑1 (MQ=255)                                                                                                              CCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCTATAACAGCATTGCTAATg                             <  2:419928‑M1/141‑1 (MQ=255)                                                                                                              CCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCTATAACAGCATTGCTAATg                             <  1:555709‑M1/141‑1 (MQ=255)                                                                                                              CCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCAGTAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCTATAACAGCATTGCTAATg                             <  1:568477‑M1/141‑1 (MQ=255)                                                                                                               CGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCTATAACAGCATTGCTAATGt                            <  2:65321‑M1/141‑1 (MQ=255)                                                                                                               CGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCTATAACAGCATTGCTAATGt                            <  1:700540‑M1/141‑1 (MQ=255)                                                                                                                   ggTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAAGCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCTATAACAGCATTGCTAATGTAGaa                        <  2:753086/141‑1 (MQ=255)                                                                                                                    gTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCTATAACAGCATTGCTAATGTAGAat                       <  2:735682/141‑1 (MQ=255)                                                                                                                     ttcgaagcgaccaacggcttttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCTATAACAGCATTGCTaatgtaactct                      >  2:349992‑M2/23‑136 (MQ=255)                                                                                                                      ctctTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCTATAACAGCATTGCTAATGTAGAatat                     <  1:4516/141‑1 (MQ=255)                                                                                                                       tctTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCTATAACAGCATTGCTAATGTAGAatata                    <  2:708327/141‑1 (MQ=255)                                                                                                                         ttCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCTATAACAGCATTGCTAATGTAGAATATAtt                  >  1:402531/1‑141 (MQ=255)                                                                                                                          tCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCTATAACAGCATTGCTAATGTAGAATATAttt                 <  2:536731/141‑1 (MQ=255)                                                                                                                            gAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCTATAACAGCATTGCTAATGTAGAATATATTTTc               <  1:412554/141‑1 (MQ=255)                                                                                                                            gAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAAGCAAGAGTATCTTTGGATACACTGATGATATCTATAACAGCATTGCTAATGTAGAATATATTTTc               <  1:412556/141‑1 (MQ=255)                                                                                                                            gAAACTACGGCTTTTATCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCTATAACAGCATTGCTAATGTAGAATATATTTTc               <  1:483003/141‑1 (MQ=255)                                                                                                                              atcTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCTATAACAGCATTGCTAATGTAGAATATATTTTCtt             <  1:774617/139‑1 (MQ=255)                                                                                                                              aaCTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCTATAACAGCATTGCTAATGTAGAATATATTTTCtt             <  1:774589/141‑1 (MQ=255)                                                                                                                              aaCTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTACCTTTGGATACACTGATGATATCTATAACAGCATTGCTAATGTAGAATATATTTTCtt             >  2:717617/1‑141 (MQ=255)                                                                                                                                 tACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCTATAACAGCATTGCTAATGTAGAATATATTTTCTTGAt          <  2:523446/141‑1 (MQ=255)                                                                                                                                  acggcttttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTGTCTTTGGATAAAATGATGATAACTATAACAGCATTGCTAATGTAGAATATATTTTCTTGAtt         >  2:612791‑M2/10‑141 (MQ=255)                                                                                                                                         ttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCTATAACAGCATTGCTAATGTAGAATATATTTTCTTGATTATAGAAt  <  2:356302‑M2/139‑1 (MQ=255)                                                                                                                                         ttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCTATAACAGCATTGCTAATGTAGAATATATTTTCTTGACTATAGAAt  <  1:579758‑M2/139‑1 (MQ=255)                                                                                                                                           |                                                                                                                                           TCCTAGAAAATCTTTAGGTTATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATATCTATAACAGCATTGCTAATGTAGAATATATTTTCTTGATTATAGAAT  >  CP000730/2862937‑2863213

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.