New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2365752 =	53 (0.810)	4 (0.070)	4/240	NT	8.2%	coding (200/318 nt)	rplX	ribosomal protein L24
	?	CP000730	2365784 =	40 (0.660)					coding (168/318 nt)	rplX	ribosomal protein L24

GATTTAATTTCTTCGCCAGATTTTTTAGCGATACGAACTTTTTTACCATCAACAAATTTGTAACCTACACGAGTTGGTTCGTTTGTTTTAGGGTCCAATAATTGTACATTAGAAACATGGATTGCTGCCTCTGTTTCTAAGATTCCACCTTCAGGATTTAATTGAGTTGGTTTTTGGTGTTTTTTCATAATGTTAACACCTTCCACAACGACACGGTCTTTTTTAGGTAGAGTAGCAATTACTTTACCTTCTTTACCTTTGTCTTTACCTGCGATAACTT  >  CP000730/2365644‑2365923                                                                                                                                             |                                                                                                                                            gATTTAATTTCTTCGCCAGATTTTTTAGCGATACGAACTTTTTTACCATCAACAAATTTGTAACCTACACGAGTTGGTTCGTTTGTTTTAGGGTCCAATAATTGTACATTAGAAACATGGATTGCTGCCTCTGTTTCTAAg                                                                                                                                             >  1:720335/1‑141 (MQ=255)   tttAATTTCTTCGCCAGATTTTTTAGCGATACGAACTTTTTTACCATCAACAAATTTGTAACCTACACGAGTTGGTTCGTTTGTTTTAGGGTCCAATAATTGTACATTAGAAACATGGATTGCTGCCTCTGTTTCTAAGAt                                                                                                                                           <  2:155560/141‑1 (MQ=255)    ttAATTTCTTCGCCAGATTTTTTCGCTATACGAACTTTTTTACCATCAACAAATTTGTAACCTACACGATTTTTTTCGTTTGTTTTAGGGTCCAATAATTGTACATTAGAAACATCGATTCCTGCCTCTGTTTCTAATAtt                                                                                                                                          <  2:360056/141‑1 (MQ=255)    ttAATTTCTTCGCCAGATTTTTTAGCGATACGAACTTTTTTACCATCAACAAATTTGTAACCTACACGAGGTGGTTAGTTTGTTTTAGGGTCCAATAATTGTACATTAGAAACATGGATTGCTGCCTCTGTTTCTAAGAtt                                                                                                                                          >  1:286079/1‑141 (MQ=255)          tcttcGCCAGATTTTTTAGCGATACGAACTTTTTTACCATCAACAAATTTGTAACCTACACGAGTTGGTTCGTTTGTTTTAGGGTCCAATAATTGTACATTAGAAACATGGATTGCTGCCTCTGTTTCTAAGATTCCACCt                                                                                                                                    >  1:725022/1‑141 (MQ=255)          attgctactctacctaaaaaagaccgtgtcgttgtggaaggtgttaacattatgaaaaaacaccaaaaaccaactcaattaaatcctgaaggtggaatcTTAGAAACATGGATTGCTGCCTCTGTTTCTAAGATTCCACCt                                                                                                                                    >  1:246603‑M1/100‑141 (MQ=255)           cttcGCCAGATTTTTTAGCGATACGAACTTTTTTACCATCAACAAATTTGTAACCTACACGAGTTGGTTCGTTTGTTTTAGGGTCCAATAATTGTACATTAGAAACATGGATTGCTGCCTCTGTTTCTAAGATTCCACCtt                                                                                                                                   >  2:497244/1‑141 (MQ=255)              cGCCAGATTTTTTAGCGATACTAACTTTTTTACCATCAACAAATTTGTAACCTACACGAGTTGGTTCGTTTGTTTTAGGGTCCAATAATTGTACATTAGAAACATTGATTGCTGCCTCTGTTTCTAAGATTCCACCTTCAg                                                                                                                                <  1:521906/141‑1 (MQ=255)              cGCCAGATTTTTTAGCGATACGAACTTTTTTACCATCAACAAATTTGTAACCTACACGAGTTGGTTCGTTTGTTTTAGGGTCCAATAATTGTACATTAGAAACATGGATTGCTGCCTCTGTTTCTAAGATTCCACCTTCAg                                                                                                                                <  2:302969/141‑1 (MQ=255)               gCCAGATTTTTTAGCGATACGAACTTTTTTACCATCAACAAATTTGTAACCTACACGAGTTGGTTCGTTTGTTTTAGGGTCCAATAATTGTACATTAGAAACATGGATTGCTGCCTCTGTTTCTAAGATTCCACCTTCAgg                                                                                                                               >  1:94809/1‑141 (MQ=255)                      tttttAGCGATACGAACTTTTTTACCATCAACAAATTTGTAACCTACACGAGTTGGTTCGTTTGTTTTAGGGTCCAATAATTGTACATTAGAAACATGGATTGCTGCCTCTGTTTCTAAGATTCCACCTTCAGGATTTAAt                                                                                                                        <  2:344820/141‑1 (MQ=255)                        tttAGCGATACGAACTTTTTTACCATCAACAAATTTGTAACCTACACGAGTTGGTTCGTTTGTTTTAGGGTCCAATAATTGTACATTAGAAACATGGATTGCTGCCTCTGTTTCTAAGATTCCACCTTCAGGATTTAATTg                                                                                                                      <  1:774181/141‑1 (MQ=255)                           aGCGATACGAACTTTTTTACCATCAACAAATTTGTAACCTACACGAGTTGGTTCGTTTGTTTTAGGGTCCAATAATTGTACATTAGAAACATGGATTGCTGCCTCTGTTTCTAAGATTCCACCTTCAGGATTTAATTGAGt                                                                                                                   <  2:242677/141‑1 (MQ=255)                           aGCGATACGAACTTTTTTACCATCAACAAATTTGTAACCTACACGAGTTGGTTCGTTTGTTTTAGGGTCCAATAATTGTACATTAGAAACATGGATTGCTGCCTCTGTTTCTAAGATTCCACCTTCAGGATTTAATTGAGt                                                                                                                   >  1:292113/1‑141 (MQ=255)                              gATACGAACTTTTTTACCATCAACAAATTTGTAACCTACACGAGTTGGTTCGTTTGTTTTAGGGTCCAATAATTGTACATTAGAAACATTGATTGCTGCCTCTGTTTCTAAGATTCCACCTTCAGGATTTAATTGAGTTgg                                                                                                                >  2:699822/1‑141 (MQ=255)                                   gAACTTTTTTACCATCAACAAATTTGTAACCTACACGAGTTGCTTCGTTTGTTTTAGGGTCCAATAATTGTACATTAGAAACATGGATTGCTGCCTCTGTTTCTAAGATTCCACCTTCAGGATTTAATTGAGTTGGttttt                                                                                                           <  2:751570/141‑1 (MQ=255)                                      cTTTTTTACCATCAACAAATTTGTAACCTACACGAGTTGGTTCGTTTGTTTTAGGGTCCAATAATTGTACATTAGAAACATGGATTGCTGCCTCTGTTTCTAAGATTCCACCTTCAGGATTTAATTGAGTTGGTTTTTGgt                                                                                                        >  2:6821/1‑141 (MQ=255)                                      cTTTTTTACCATCAACAAATTTGTAACCTACACGAGTTGGTTCGTTTGTTTTAGGGTCCAATAATTGTACATTAGAAACATGGATTGCTGCCTCTGTTTCTAAGATTCCACCTTCAGGATTTAATTGAGTTGGTTTTTGgt                                                                                                        >  2:479553/1‑141 (MQ=255)                                            tACCATCAACAAATTTGTAACCTACACGANTTGGTTCGTTTGTTTTAGGGTCCAATAATTGTACATTAGAAACATGGATTGCTGCCTCTGTTTCTAAGATTCCACCTTCAGGATTTAATTGAGTTGGTTTTTGGGGtgttt                                                                                                  >  1:504696/1‑141 (MQ=255)                                                aTCAACAAATTTGTAACCTACACGAGTTGGTTCGTTTGTTTTAGGGTCCAATAATTGTACATTAGAAACATGGATTGCTGCCTCTGTTTCTAAGATTCCACCTTCAGGATTTAATTGAGTTGGTTTTTGGTGTTTTTTCAt                                                                                              <  2:187030/141‑1 (MQ=255)                                                 tCAACAAATTTGTAACCTACACGAGTTGGTTCGTTTGTTTTAGGGTCCAATAATTGTACATTAGAAACATGGATTGCTGCCTCTGTTTCTAAGATTCCACCTTCAGGATTTAATTGAGTTGGTTTTTGGTGTTTTTTCATa                                                                                             >  1:719873/1‑141 (MQ=255)                                                 tCAACAAATTTGTAACCTACACGAGTTGGTTCGTTTGTTTTAGGGTCCAATAATTGTACATTAGAAACATGGATTGCTGCCTCTGTTTCTAAGATTCCACCTTCAGGATTTAATTGAGTTGGTTTTTGGTGTTTTTTCATa                                                                                             >  1:192480/1‑141 (MQ=255)                                                      aaaTTTGTAACCTACACGAGTTGGTTCGTTTGTTTTAGGGTCCAATAATTGTACATTAGAAACATGGATTGCTGCCTCTGTTTCTAAGATTCCACCTTCAGGATTTAATTGAGTTGGTTTTTGGTGTTTTTTCATAATGtt                                                                                        <  1:428116/141‑1 (MQ=255)                                                      aaaTTTGTAACCTACACGAGTTGGTTCGTTTGTTTTAGGGTCCAATAATTGTACATTAGAAACATGGATTGCTGCCTCTGTTTCTAAGATTCCACCTTCAGGATTTAATTGAGTTGGTTTTTGGTGTTTTTTCATAATGtt                                                                                        <  1:545550/141‑1 (MQ=255)                                                      aaaTTTGTAACCTACACGAGTTGGTTCGTTTGTTTTAGGGTCCAATAATTGTACATTAGAAACATGGATTGCTGCCTCTGTTTCTAAGATTCCACCTTCAGGATTTAATTGAGTTGGTTTTTGGTGTTTTTTCATAATGtt                                                                                        <  2:42719/141‑1 (MQ=255)                                                         tttGTAACCTACACGAGTTGGTTCGTTTGTTTTAGGGTCCAATAATTGTACATTAGAAACATGGATTGCTGCCTCTGTTTCTAAGATTCCACCTTCAGGATTTAATTGAGTTGGTTTTTGGTGTTTTTTCATAATGTTAac                                                                                     <  2:493964/141‑1 (MQ=255)                                                          tggTAATCGACTCGAGTAGGTTCGTTTGTTTTGGGGTCCGATAATTGTACATGAGAATCATGGATTGGTGCCTCTGTTTCTAAGATTCCACCTTCAGGATTTTATTGTGTTGGTTTTTGGTGTTTTTTCATTATGTTagcc                                                                                    <  2:252172/139‑4 (MQ=255)                                                           tGTAACCTACACGAGTTGGTTCGTTTGTTTTAGGGTCCAATAATTGTACATTAGAAACATGGATTGCTGCCTCTGTTTCTAAGATTCCACCTTCAGGATTTAATTGAGTTGGTTTTTGGTGTTTTTTCATAATGTTAacac                                                                                   <  2:286226/141‑1 (MQ=255)                                                            gTAACCTACACGAGTTGGTTCGTTTGTTTTAGGGTCCAATAATTGTACATTAGAAACATGGATTGCTGCCTCTGTTTCTAAGATTCCACCTTCAGGATTTAATTGAGTTGGTTTTTGGTGTTTTTTCATAATGTTAACAcc                                                                                  <  1:538220/141‑1 (MQ=255)                                                                 cTACACGAGTTGGTTCGTTTGTTTTAGGGTCCAATAATTGTACATTAGAAACATGGATTGCTGCCTCTGTTTCTAAGATTCCACCTTCAGGATTTAATTGAGTTGGTTTTTGGTGTTTTTTCATAATGTTAACACCTTCca                                                                             >  2:723506/1‑141 (MQ=255)                                                                   acacGAGTTGGTTCGTTTGTTTTAGGGTCCAATAATTGTACATTAGAAACATGGATTGCTGCCTCTGTTTCTAAGATTCCACCTTCACGATTTAATTGAGTTGGTTTTTGGTGTTTTTTCATAATGTTAACACCTTCcaca                                                                           <  1:400420/141‑1 (MQ=255)                                                                        aGTTGGTTCGTTTGTTTTAGGGTCCAATAATTGTACATTAGAAACATGGATTGCTGCCTCTGTTTCTAAGATTCCACCTTCAGGATTTAATTGAGTTGGTTTTTGGTGTTTTTTCATAATGTTAACACCTTCCACAACGac                                                                      <  1:52081/141‑1 (MQ=255)                                                                        aGTTGGTTCGTTTGTTTTAGGGTCCAATAATTGTACATTAGAAACATGGATTGCTGCCTCTGTTTCTAAGATTCCACCTTCAGGATTTAATTGAGTTGGTTTTTGGTGTTTTTTCATAATGTTAACACCTTCCACAACGac                                                                      <  1:679594/141‑1 (MQ=255)                                                                           tGGTTCGTTTGTTTTAGGGTCCAATAATTGTACATTAGAAACATGGATTGCTGCCTCTGTTTCTAAGATTCCACCTTCAGGATTTAATTGAGTTGGTTTTTGGTGTTTTTTCATAATGTTAACACCTTCCACAACGACACg                                                                   <  1:637662/141‑1 (MQ=255)                                                                                      ttttAGGGTCCAATAATTGTACATTAGAAACATGGATTGCTGCCTCTGTTTCTAAGATTCCACCTTCAGGATTTAATTGAGTTGGTTTTTGGTGTTTTTTCATAATGTTAACACCTTCCACAACGACACGGTCTTTTTTAg                                                        >  1:549701/1‑141 (MQ=255)                                                                                          aaatcctgaaggtggaatcttagaaacagaggcagcaatccatgtttctaaGATTCCACCTTCAGGAttt                                                                                                                           >  1:415806‑M2/52‑70 (MQ=255)                                                                                          aaatcctgaaggtggaatcttagaaacagaggcagcaatccatgtttctaaGATTCCACCTTCAGGAttt                                                                                                                           <  2:415806‑M2/19‑1 (MQ=255)                                                                                          aaatcctgaaggtggaatcTTAGAAACATGGATTGCTGCCTCTGTTTCTAAGATTCCACCTTCAGGAttt                                                                                                                           <  2:415806‑M1/51‑1 (MQ=255)                                                                                          aaatcctgaaggtggaatcTTAGAAACATGGATTGCTGCCTCTGTTTCTAAGATTCCACCTTCAGGAttt                                                                                                                           >  1:415806‑M1/20‑70 (MQ=255)                                                                                          aGGGTCCAATAATTGTACATTAGAAACATGGATTGCTGCCTCTGTTTCTAAGATTCCACCTTCAGGATTTAATTGAGTTGGTTTTTGGTGTTTTTTCATAATGTTAACACCTTCCACAACGACACGGTCTTTTTTAGGTag                                                    >  2:240788/1‑141 (MQ=255)                                                                                               ccAATAATTGTACATTAGAAACATGGATTGCTGCCTCTGTTTCTAAGATTCCACCTTCAGGATTTAATTGAGTTGGTTTTTGGTGTTTTTTCATAATGTTAACACCTTCCACAACGACACGGTCTTTTTTAGGTAGAGTAg                                               >  2:347637/1‑141 (MQ=255)                                                                                                   taatTGTACATTAGAAACATGGATTGCTGCCTCTGTTTCTAAGATTCCACCTTCAGGATTTAATTGAGTTGGTTTTTGGTGTTTTTTCATAATGTTAACACCTTCCACAACGACACGGTCTTTTTTAGGTAGAGTAGCAAt                                           <  1:394582/141‑1 (MQ=255)                                                                                                   aggtggaatcttagaaacagaggcagcaatccatgtttctaaGATTCCACCTTCAGGATTTAATTGAGTTGGTTTTTGGTGTTTTTTCATAATGTTAACACCTTCCACAACGACACGGTCTTTTTTAGGTAGAGTAGCAAt                                           >  1:246603‑M2/43‑141 (MQ=255)                                                                                                          aCATTAGAAACATGGATTGCTGCCTCTGTTTCTAAGATTCCACCTTCAGGATTTAATTGAGTTGGTTTTTGGTGTTTTTTCATAATGTTAACACCTTCCACAACGACACGGTCTTTTTTAGGTAGAGTAGCAATTActtta                                    >  1:677489/1‑141 (MQ=255)                                                                                                           cATTAGAAACATGGATTGCTGCCTCTGTTTCTAAGATTCCACCTTCAGGATTTAATTGAGTTGGTTTTTGGTGTTTTTTCATAATGTTAACACCTTCCACAACGACACGGTCTTTTTTAGGTAGAGTAGCAATTActttac                                   <  1:597340/141‑1 (MQ=255)                                                                                                                 AAACATGGATTGCTGCCTCTGTTTCTAAGATTCCACCTTCAGGATTTAATTGAGTTGGTTTTTGGTGTTTTTTCATAATGTTAACACCTTCCACAACGACACGGTCTTTTTTAGGTAGAGTAGCAATTACTTTACcttctt                             >  2:223285‑M1/1‑141 (MQ=255)                                                                                                                    CATGGATTGCTGCCTCTGTTTCTAAGATTCCACCTTCAGGATTTAATTGAGTTGGTTTTTGGTGTTTTTTCATAATGTTAACACCTTCCACAACGACACGGTCTTTTTTATGTAGAGTAGCAATTACTTTACCTTCTTTAc                          >  1:183845‑M1/1‑141 (MQ=255)                                                                                                                     ATGGATTGCTGCCTCTGTTTCTAAGATTCCACCTTCAGGATTTAATTGAGTTGGTTTTTTTTTTTTTTTTATAATGTTAAAACCTTCCACAACATCACGGTTTTTTTTAGGTAGAGTAGCAATTACTTTCCCTTCTttatc                         <  2:479417‑M1/141‑3 (MQ=255)                                                                                                                      tGGATTGCTGCCTCTGTTTCTAAGATTCCACCTTCAGGATTTAATTGAGTTGGTTTTTGGTGTTTTTTCATAATGTTAACACCTTCCACAACGACACGGTCTTTTTTAGGTAGAGTAGCAATTActttaccttctttacct                        <  2:292702/141‑1 (MQ=255)                                                                                                                      gaggcagcaatccatgnttctaaGATTCCNCCTTCAGGATTTAATTGAGTTGGTTTTTGGTGTTTTTTCATAATGTTAACACCTTCCACAACGACACGGTCTTTTTTAGGTAGAGTAGCAATTActttaccttctttacct                        >  1:732707‑M2/24‑141 (MQ=255)                                                                                                                       ggATTGCTGCCTCTGTTTCTAAGATTCCACTTTCAGGATTTAATTGAGTTGGTTTTTGGTGTTTTTTCATAATGTTAACACCTTCCACAACGACACGGTCTTTTTTAGGTAGAGTAGCAATTActttaccttctttacctt                       <  1:168420/141‑1 (MQ=255)                                                                                                                       ggATTGCTGCCTCTGTTTCTAAGATTCCACCTTCAGGATTTAATTGAGTTGGTTTTTGGTGTTTTTTCATAATGTTAACACCTTCCACAACGACACGGTCTTTTTTAGGTAGAGTAGCAATTActttaccttctttacctt                       <  1:353413/141‑1 (MQ=255)                                                                                                                             ctgcCTCTGTTTCTAAGATTCCACCTTCAGGATTTAATTGCGTTGGTTTTTGGTGTTTTTTCATAATGTTAACACCTTCCACAACGACACGGTCTTTTTTAGGTAGAGTAGCAATTACTTTACCGTCTTTACCTTTGTCtt                 >  1:736580/1‑141 (MQ=255)                                                                                                                             ctgcCTCTGTTTCTAAGATTCCACCTTCAGGATTTAATTGAGTTGGTTTTTGGTGTTTTTTCATAATGTTAACACCTTCCACAACGACACGGTCTTTTTTAGGTAGAGTAGCAATTACTTTACCTTCTTTACCTTTGTCtt                 >  1:267179/1‑141 (MQ=255)                                                                                                                                   ctGTTTCTAAGATTCCACCTTCAGGATTTAATTGAGTTGGTTTTTGGTGTTTTTTCATAATGTTAACACCTTCCACAACGACACGGTCTTTTTTAGGTAGAGTAGCAATTACTTTACCTTCTTTACCTTTGTCTTTACCTg           <  1:723506/141‑1 (MQ=255)                                                                                                                                       ttctaaGATTCCACCTTCAGGATTTAATTGAGTTGGTTTTTGGTGTTTTTTCATAATGTTAACACCTTCCACAACGACACGGTCTTTTTTAGGTAGAGTAGCAATTACTTTACCTTCTTTACCTTTGTCTTTACCTGCGAt       <  1:3469‑M2/135‑1 (MQ=255)                                                                                                                                         ctaaGATTCCACCTTCAGGATTTAATTGAGTTGGTTTTTGGTGTTTTTTCATAATGTTAACACCTTCCACAACGACACGGTCTTTTTTAGGTAGAGTAGCAATTACTTTACCTTCTTTACCTTTGTCTTTACCTGCGATaa     >  1:22120‑M2/5‑141 (MQ=255)                                                                                                                                          taaGATTCCACCTTCAGGATTTAATTGAGTTGGTTTTTGGTGTTTTTTCATAATGTTAACACCTTCCACAACGACACGGTCTTTTTTAGGTAGAGTAGCAATTACTTTACCTTCTTTACCTTTGTCTTTACCTGCGATAAc    <  1:647480‑M2/138‑1 (MQ=255)                                                                                                                                            aGATTCCATCTTCAGGATTTAATTGAGTTGGTTTTTGGTGTTTTTTCATAATGTTAACACCTTCCACAACGACACGGTCTTTTTTAGGTAGAGTAGCAATTACTTTACCTTCTTTGCCTTTGTCTTTACCTGCGATAACtt  <  2:785537‑M2/140‑1 (MQ=255)                                                                                                                                             |                                                                                                                                            GATTTAATTTCTTCGCCAGATTTTTTAGCGATACGAACTTTTTTACCATCAACAAATTTGTAACCTACACGAGTTGGTTCGTTTGTTTTAGGGTCCAATAATTGTACATTAGAAACATGGATTGCTGCCTCTGTTTCTAAGATTCCACCTTCAGGATTTAATTGAGTTGGTTTTTGGTGTTTTTTCATAATGTTAACACCTTCCACAACGACACGGTCTTTTTTAGGTAGAGTAGCAATTACTTTACCTTCTTTACCTTTGTCTTTACCTGCGATAACTT  >  CP000730/2365644‑2365923

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.