New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	760026 =	41 (1.490)	3 (0.120)	3/230	NT	7.6%	coding (1674/1674 nt)	cydC	ABC superfamily ATP binding cassette transporter, ABC protein
	?	CP000730	760070 =	36 (1.470)					intergenic (+44/+83)	cydC/USA300HOU_0709	ABC superfamily ATP binding cassette transporter, ABC protein/possible MarR family transcriptional regulator

CATTTGATGAAACAAAGGAAAAATAATTAACTTTTGTCATGACAATTAAAGTAATGTTTAGAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/760178‑760026 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaagcagttttttAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCTTTGTTTCATCAAATGCATGAATGACTTTACCTAATAAGCGATTAAG  >  CP000730/760070‑760209                                                                                                                                                                                                                                                                                                       CATTTGATGAAACAAAGGAAAAATAATTAACTTTTGTCATGACAATTAAAGTAATGTTTAGAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATC                                                                                                                                                          >  1:92127/1‑141    TTGATGAAACAAAGGAAAAATAATTAACTTTTGTCATGACAATTAAAGTAATGTTTAGAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAG                                                                                                                                                       >  1:291589/1‑141       ATGAAACAAAGGAAAAATAATTAACTTTTGTCATGACAATTAAAGTAATGTTTAGAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGCAG                                                                                                                                                    <  1:24014/141‑1         GAAACAAAGGAAAAATAATTAACTTTTGTCATGACAATTAAAGTAATGTTTAGAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGCAGTT                                                                                                                                                  >  1:15978/1‑141                                                     AATGTTTAGAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTG                                                                                                                          >  1:130370/1‑121                                                     AATGTTTAGAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGATAGGCTAAGAAACCTTTCAAGCAGTTTTTTAACTAACAAGCTTACGCGTG                                                                                                                          <  2:130370/121‑1                                                                                                                                TTTCTTAGCCTATCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCTTTGTTTCATCAAATGCATGAA                           >  1:44328/1‑141                                                                                                                                            TCAAGCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTACTTTGTTTCATCAAATGCATGAATGACTTTACCTA               >  1:84566/1‑141                                                                                                                                                GCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCTTTGTTTCATCAAATGCATGAATGACTTTACCTAATAA           <  2:69806/141‑1                                                                                                                                                GCAGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCTTTGTTTCATCAAATGCATGAATGACTTTACCTAATAA           >  2:108771/1‑141                                                                                                                                                  AGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCTTTGTTTCATCAAATGCATGAATGACTTTACCTAATAAGC         >  1:144422/1‑141                                                                                                                                                  AGTTTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCTTTGTTTCATCAAATGCATGAATGACTTTACCTAATAAGC         <  2:252998/141‑1                                                                                                                                                     TTTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTCATTATTTTTCCTTTGTTTCATCAAATGCATGAATGACTTTACCTAATAAGCGAT      <  2:40593/141‑1                                                                                                                                                      TTTTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCTTTGTTTCATCAAATGCATGAATGACTTTACCTAATAAGCGATT     <  2:108825/141‑1                                                                                                                                                        TTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCTTTGTTTCATCAAATGCATGAATGACTTTACCTAATAAGCGATTAA   >  2:128702/1‑141                                                                                                                                                        TTAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCTTTGTTTCATCAAATGCATGAATGACTTTACCTAATAAGCGATTAA   >  1:34129/1‑141                                                                                                                                                         TAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGAAAAGACAAAAGTTAATTATTTTTCCTTTGTTTCATCAAATGCATGAATGACTTTACCTAATAAGCGATTAAG  <  2:102145/141‑1                                                                                                                                                                                                                                                                                                       CATTTGATGAAACAAAGGAAAAATAATTAACTTTTGTCATGACAATTAAAGTAATGTTTAGAATTTATTAAGAATAGAAAAACAATTAGCACGCGTAAGCTTGTTAGTTAAAAAACTGCTTGAAAGGTTTCTTAGCCTATCAAGCAGTTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/760178‑760026 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaagcagttttttAACTAACAAGCTTACGCGTGCTAATTGTTTTTCTATTCTTAATAAATTCTAAACATTACTTTAATTGTCATGACAAAAGTTAATTATTTTTCCTTTGTTTCATCAAATGCATGAATGACTTTACCTAATAAGCGATTAAG  >  CP000730/760070‑760209

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.