New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2746384	25 (0.910)	5 (0.190)	5/242	NT	17.4%	intergenic (+7/+53)	USA300HOU_2601/acsA2	hypothetical protein/acetate‑‑CoA ligase
	?	CP000730	= 2746433	24 (0.930)					intergenic (+56/+4)	USA300HOU_2601/acsA2	hypothetical protein/acetate‑‑CoA ligase

TGCCGGTGATAGTAATGTGTTTTTATTAAACTGGGATATTCGAGGTTTAACATCTTATATTTTCTCATTCTTAATACTGGTTGCGCTTGTTTCTAAACTAATTTTAATATTTATAACTAGACGACAAAGAACATCATAAATAAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2746239‑2746384 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aataaacaTAGCAAAGCAGTCCAATGCGTAAGGTATGATGATACGCACTGGACTGCTTGTTTATTTATGATGTTCTTTGTCGTCTAGTTATAAATATTAAAATTAGTTTAGAAACAAGCGCAACCAGTATTAAGAATGAGAAAATA  <  CP000730/2746433‑2746296                                                                                                                                                                                                                                                                                              TGCCGGTGATAGTAATGTGTTTTTATTAAACTGGGATATTCGAGGTTTAACATCTTATATTTTCTCATTCTTAATACTGGTTGCGCTTGTTTCTAAACTAATTTTAATATTTATAACTAGACGACAAAGAACATCATAAAT                                                                                                                                                 <  2:203275/141‑1                                       TTCGAGGTTTAACATCTTATATTTTCTCATTCTTAATACTGGTTGCGCTTGTTTCTAAACTAATTTTAATATTTATAACTAGACGACAAAGAACATCATAAATAAACATAGCAAAGCAGTCCAATGCGTAAGGTATGATGA                                                                                                           <  1:281998/141‑1                                       TTCGAGGTTTAACATCTTATATTTTCTCATTCTTAATACTGGTTGCGCTTGTTTCTAAACTAATTTTAATATTTATAACTAGACGACAAAGAACATCATAAATAAAC‑‑‑‑‑‑AAGCAGTCCAATGCGTAAGGTATGATGATACGCA                                                                                                     <  1:225460/141‑1                                             GTTTAACATCTTATATTTTCTCATTCTTAATACTGGTTGCGCTTGTTTCTAAACTAATTTTAATATTTATAACTAGACGACAAAGAACATCATAAATAAAC‑‑‑‑‑‑AAGCAGTCCAATGCGTAAGGTATGATGATACGCACTGGAC                                                                                               <  2:40138/141‑1                                                                                                                     CTAGACGACAAAGAACATCATAAATAAACATAGCAAAGCAGTCCAATGCGTAAGGTATGATGATACGCACTGGACTGCTTGTTTATTTATGATGTTCTTTGTCGTCTAG                                                             <  1:5680/109‑1                                                                                                                     CTAGACGACAAAGAACATCATAAATAAACATAGCAAAGCAGTCCAATGCGTAAGGTATGATGATACGCACTGGACTGCTTGTTTATTTATGATGTTCTTTGTCGTCTAG                                                             >  2:5680/1‑109                                                                                                                                                ACATAGCAAAGCAGTCCAATGCGTAAGGTATGATGCTACGCACTGGACTGCTTGTTTATCTATGATGTGCTTTGTCGTCTAGTTATAAATATTAAAATTAGTTTAGAAACAAGCGCAACCAGTATTAAGAATGAGAAAATA  <  1:64172/141‑1                                                                                                                                                ACATAGCAAAGCAGTCCAATGCGTAAGGTATGATGATACGCACTGGACTGCTTGTTTATTTATGATGTTCTTTGTCGTCTAGTTATAAATATTAAAATTAGTTTAGAAACAAGCGCAACCAGTATTAAGAATGAGAAAATA  >  2:75290/1‑141                                                                                                                                                                                                                                                                                              TGCCGGTGATAGTAATGTGTTTTTATTAAACTGGGATATTCGAGGTTTAACATCTTATATTTTCTCATTCTTAATACTGGTTGCGCTTGTTTCTAAACTAATTTTAATATTTATAACTAGACGACAAAGAACATCATAAATAAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2746239‑2746384 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aataaacaTAGCAAAGCAGTCCAATGCGTAAGGTATGATGATACGCACTGGACTGCTTGTTTATTTATGATGTTCTTTGTCGTCTAGTTATAAATATTAAAATTAGTTTAGAAACAAGCGCAACCAGTATTAAGAATGAGAAAATA  <  CP000730/2746433‑2746296

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.