New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2746384	25 (0.910)	5 (0.190)	5/242	NT	17.4%	intergenic (+7/+53)	USA300HOU_2601/acsA2	hypothetical protein/acetate‑‑CoA ligase
	?	CP000730	= 2746433	24 (0.930)					intergenic (+56/+4)	USA300HOU_2601/acsA2	hypothetical protein/acetate‑‑CoA ligase

TATTTTCTCATTCTTAATACTGGTTGCGCTTGTTTCTAAACTAATTTTAATATTTATAACTAGACGACAAAGAACATCATAAATAAACAAGCAGTCCAGTGCGTATCATCATACCTTACGCATTGGACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACCTGAGTTTGTTTTTGGTAAGTCGTCAACGAATTCAATCTCTCTCGGATATTTATATGGTGCAA  >  CP000730/2746296‑2746573                                                                                                                                          |                                                                                                                                             tatTTTCTCATTCTTAATACTGGTTGCGCTTGTTTCTAAACTAATTTTAATATTTATAACTAGACGACAAAGCACATCATAGATAAACAAGCAGTCCAGTGCGTAGCATCATACCTTACGCATTGGACTGCTTTGCTAtgt                                                                                                                                           <  1:64172‑M2/141‑4 (MQ=255) tatTTTCTCATTCTTAATACTGGTTGCGCTTGTTTCTAAACTAATTTTAATATTTATAACTAGACGACAAAGAACATCATAAATAAACAAGCAGTCCAGTGCGTATCATCATACCTTACGCATTGGACTGCTTTGCTAtgt                                                                                                                                           >  2:75290‑M2/1‑138 (MQ=255)            tCTTAATACTGGTTGCGCTTGTTTCTAAACTAATTTTAATATTTATAACTAGACGACAAAGAACATCATAAATAAACAAGCAGTCCAGTGCGTATCATCATACCTTACGCATTGGCCTGCTTTGCTATGTTTATTGATTGc                                                                                                                                <  1:215242/141‑1 (MQ=255)            tCTTAATACTGGTTGCGCTTGTTTCTAAACTAATTTTAATATTTATAACTAGACGACAAAGAACATCATAAATAAACAAGCAGTCCAGTGCGTATCATCATACCTTACGCATTGGACTGCTTTGCTATGTTTATTGATTGc                                                                                                                                <  2:255747/141‑1 (MQ=255)                    cTGGTTGCGCTTGTTTCTAAACTAATTTTAATATTTATAACTAGACGACAAAGAACATCATAAATAAACAAGCAGTCCAGTGCGTATCATCATACCTTACGCATTGGACTGCTTTGCTATGTTTATTGATTGCTATCtttt                                                                                                                        >  2:7118/1‑141 (MQ=255)                             cTTGTTTCTAAACTAATTTTAATATTTATAACTAGACGACAAAGAACATCATAAATAAACAAGCAGTCCAGTGCGTATCATCATACCTTACGCATTGGACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGc                                                                                                               <  2:221046/141‑1 (MQ=255)                                       aaCTAATTTTAATATTTATAACTAGACGACAAAGAACATCATAAATAAACAAGCAGTCCAGTGCGTATCATCATACCTTACGCATTGGACTGTTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTa                                                                                                     <  1:204689/141‑1 (MQ=255)                                          tAATTTTAATATTTATAACTAGACGACAAAGAACATCATAAATAAACAAGCAGTCCAGTGCGTATCATCATACCTTACGCATTGGACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTAttt                                                                                                  <  1:88698/141‑1 (MQ=255)                                                 aaTATTTATAACTAGACGACAAAGAACATCATAAATAAACAAGCAGTCCAGTGCGTATCATCATACCTTACGCATTGGACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCAtc                                                                                           >  1:209467/1‑141 (MQ=255)                                                  atatTTATAACTAGACGACAAAGAACATCATAAATAAACAAGCAGTCCAGTGCGTATCATCATACCTTACGCATTGGACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTTCCATTTTTCTGTTTCAGCAtct                                                                                          >  1:231159/1‑141 (MQ=255)                                                  atatTTATAACTAGACGACAAAGAACATCATAAATAAACAAGCAGTCCAGTGCGTATCATCATACCTTACGCATTGGACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCAtct                                                                                          >  2:109469/1‑141 (MQ=255)                                                   tatTTATAACTAGACGACAAAGAACATCATAAATAAACAAGCAGTCCAGTGCGTATCATCATACCTTACGCATTGGACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCAtctc                                                                                         <  1:90052/141‑1 (MQ=255)                                                            cTAGACGACAAAGAACATCATAAATAAACAAGCAGTCCAGTGCGTATCATCATACCTTACGCATTGGACTGCTTTGCTAtgtttatttatgatgttctttgtcgtctag                                                                                                                >  2:5680‑M2/1‑79 (MQ=255)                                                            cTAGACGACAAAGAACATCATAAATAAACAAGCAGTCCAGTGCGTATCATCATACCTTACGCATTGGACTGCTTTGCTAtgtttatttatgatgttctttgtcgtctag                                                                                                                <  1:5680‑M2/109‑31 (MQ=255)                                                                  gacAAAGAACATCATAAATAAACAAGCAGTCCAGTGCGTATCATCATACCTTACGCATTGGACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACacgac                                                                          <  1:268276/141‑1 (MQ=255)                                                                  gacAAAGAACATCATAAATAAACAAGCAGTCCAGTGCGTATCATCATACCTTACGCATTGGACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACacgac                                                                          >  1:38019/1‑141 (MQ=255)                                                                      aaGAACATCATAAATAAACAAGCAGTCCAGTGCGTATCATCATACCTTACGCATTGGACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAAt                                                                      <  2:6580/141‑1 (MQ=255)                                                                      aaGAACATCATAAATAAACAAGCAGTCCAGTGCGTATCATCATACCTTACGCATTGGACTCCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGaaa                                                                      >  1:170537/1‑140 (MQ=255)                                                                                taaataaaCATGCAGTCCAGTGCGTATCATCATACCTTACGCATTGGACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACCTGAg                                                            <  1:195723/141‑1 (MQ=255)                                                                                          aGCAGTCCAGTGCGTATCATCATACCTTACGCATTGGACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACCTGAGTTTGTTTTTg                                                  <  1:328297/141‑1 (MQ=255)                                                                                           gCAGTCCAGTGCGTATCATCATACCTTCCGCATTGGACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACCTGAGTTTGTTTTTgg                                                 <  2:330690/141‑1 (MQ=255)                                                                                              gTCCAGTGCGTATCATCATACCTTACGCATTGGACTGCTT‑‑‑‑tttatttatgatgttctttgtcgtctagttataaatattaaaattagtttagaaacaagcgcaaccagtattaagaatgagaaaatataagatgttaaac                                           <  2:40138‑M2/141‑101 (MQ=255)                                                                                               tCCAGTGCGTATCATCATACCTTACGCATTGGACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTCTCGGAGTTTGTTTTTGGTAAg                                             >  1:253629/1‑141 (MQ=255)                                                                                                   gTGCGTATCATCATACCTTACGCATTGGACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACCTGAGTTTGTTTTTGGTAAgtcgt                                         <  1:281139/141‑1 (MQ=255)                                                                                                    tGCGTATCATCATACCTTACGCATTGGACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACCTGAGTTTGTTTTTGGTAAgtcgtc                                        >  1:149286/1‑141 (MQ=255)                                                                                                    tGCGTATCATCATACCTTACGCATTGGACTGCTT‑‑‑‑tttatttatgatgttctttgtcgtctagttataaatattaaaattagtttagaaacaagcgcaaccagtattaagaatgagaaaatataagatgttaaacctcgaa                                     <  1:225460‑M2/141‑107 (MQ=255)                                                                                                      cGTATCATCATACCTTACGCATTGGACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACCTGAGTTTGTTTTTGGTAAGTCGTCaa                                      >  1:49100/1‑141 (MQ=255)                                                                                                       gTATCATAATACCTTACGCATTGGACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACCTGAGTTTGTTTTTGGTAAGTCGTCAAc                                     >  1:294023/1‑141 (MQ=255)                                                                                                          tcatcaTACCTTACGCATTGGACTGCTTTGCTAtgtttatttatgatgttctttgtcgtctagttataaatattaaaattagtttagaaacaagcgcaaccagtattaagaatgagaaaatataagatgttaaacctcgaa                                  <  1:281998‑M2/141‑109 (MQ=255)                                                                                                             tatgatgatACGCACTGGACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACCTGAGTTTGTTTTTGGTAAGTCGTCAACGAATTc                               >  2:158636/9‑141 (MQ=255)                                                                                                                           ttGGACTGCTTTGCTATGTTTATGGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCCTCTCGTAGTTCAACACGACGAATTCTACCTGAGTTTGTTTTTGGTAAGTCTTCAACTAATTCAATCCCTCGCGGat                 >  2:95911/1‑141 (MQ=255)                                                                                                                                         tATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACCTGAGTTTGTTTTTGGTAAGTCGTCAACGAATTCAATCTCTCTCGGATATTTATATGGTGCa   <  2:215321/141‑1 (MQ=255)                                                                                                                                          aTGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACCTGAGTTTGTTTTTGGTAAGTCGTCAACGAATTCAATCTCTCTCGGATATTTATATGGTGCaa  >  1:105183/1‑141 (MQ=255)                                                                                                                                          |                                                                                                                                             TATTTTCTCATTCTTAATACTGGTTGCGCTTGTTTCTAAACTAATTTTAATATTTATAACTAGACGACAAAGAACATCATAAATAAACAAGCAGTCCAGTGCGTATCATCATACCTTACGCATTGGACTGCTTTGCTATGTTTATTGATTGCTATCTTTTTGTTGTTGCCATTTTTCTATTTCAGCATCTCGTAGTTCAACACGACGAATTTTACCTGAGTTTGTTTTTGGTAAGTCGTCAACGAATTCAATCTCTCTCGGATATTTATATGGTGCAA  >  CP000730/2746296‑2746573

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.