New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2066558	30 (1.090)	3 (0.110)	3/248	NT	9.3%	coding (214/561 nt)	pncA	nicotinamidase
	?	CP000730	= 2066576	30 (1.130)					coding (232/561 nt)	pncA	nicotinamidase

GACAAAATATTGAAGATTTTATTGTTTCTCGTATCAATGACTTTAATTATTATCAAGACCATATATTCTTTTTAATGGATTTACATTATTTACATGACATTCATCATCCTGAAAGTAAATTATTCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAAGTAGGTAAATTATACGAAACAATTAAAGCGCAACCTAATGTACATTTCATTGATAAAACGCGCTATGATTCGTTCTTTGGTACCCCGCTTGATAGT  >  CP000730/2066427‑2066695                                                                                                                                    |                                                                                                                                          gACAAAATATTGAAGATTTTATTGTTTCTCGTATCAATGACTTTAATTATTATCAAGACCATATATTCTTTTTAATGGATTTACATTATTTACATGACATTCATCATCCTGAAAGTAAATTATTCCCACCACACAATATCg                                                                                                                                  <  1:87585/141‑1 (MQ=255)    aaaaTATTGAAGATTTTATTGTTTCTCGTATCAATGACTTTAATTATTATCAAGACCATATATTCTTTTTAATGGATTTACATTATTTACATGACATTCATCATCCTGAAAGTAAATTATTCCCCCCACACAATATCGTat                                                                                                                               >  2:229892/1‑140 (MQ=255)      aaTATTGAAGATTTTATTGTTTCTCGTATCAATGACTTTAATTATTATCAAGACCATATATTCTTTTTAATGGATTTACATTATTTACATGACATTCATCATCCTGAAAGTAAATTATTCCCACCACACAATATCGTAGAt                                                                                                                             <  1:200776/141‑1 (MQ=255)       atatTTAAGATTTTATTGTTTCTCGTATCAATGACTTTAATTATTATCAAGACCATATATTCTTTTTAATGGATTTACATTATTTACATGACATTCATCATACTGAAAGTAAATTATTCCCACCACATAATATCGTAGATa                                                                                                                            <  2:207788/141‑1 (MQ=255)       agattgAATATTTTATTGTTTCTCGTATCAATGACTTTAATTATTATCAAGACCATATATTCTTTTTAATGGAGTTACATTATTTACATGACATTCATCATCCTGAAAGTAAATTATTCCCACCCCttgtatctacgatat                                                                                                                            <  2:260414‑M1/139‑16 (MQ=255)                    tATTGTTTCTCGTATCAATGACTTTAATTATTATCAAGACCATATATTCTTTTTAATGGATTTACATTATTTACATGACATTCATCATCCTGAAAGTAAATTATTCCCACCACACAATATCGTAGATACAAGTGGTAgaga                                                                                                               >  2:155652/1‑141 (MQ=255)                     aTTGTTTCTCGTATCAATGACTTTAATTATTATCAAGACCATATATTCTTTTTAATGGATTTACATTATTTACATGACATTCATCATCCTGAAAGTAAATTATTCCCACCACACAATATCGTAGATACAAGTGGTAGAGaa                                                                                                              >  2:191395/1‑141 (MQ=255)                           tctcGTATCAATGACTTTAATTATTATCAAGACCATATATTCTTTTTAATGGATTTACATTATTTACATGACATTCATCATCCTGAAAGTAAATTATTCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATAc                                                                                                        <  1:328042/141‑1 (MQ=255)                             tcGTATCAATGACTTTAATTATTATCAAGACCATATATTCTTTTTAATGGATTTACATTATTTACATGACATTCATCATCCTGAAAGTAAATTATTCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATACgg                                                                                                      <  1:260138/141‑1 (MQ=255)                                  tCAATGACTTTAATTATTATCAAGACCATATATTCTTTTTAATGGATTTACATTATTTACATGACATTCATCATCCTGAAAGTAAATTATTCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAAg                                                                                                 <  2:331452/141‑1 (MQ=255)                                     aTGACTTTAATTATTATCAAGACCATATATTCTTTTTAATGGATTTACATTATTTACATGACATTCATCATCCTGAAAGTAAATTATTCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATATGGttttagct                                                                                              >  2:245508/1‑134 (MQ=255)                                       gACTTTAATTATTATCAAGACCATATATTCTTTTTAATGGATTTACATTATTTACATGACATTCATCATCCTGAAAGTAAATTATTCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAAGTAGGt                                                                                            <  1:41659/141‑1 (MQ=255)                                        aCTTTAATTATTATCAAGACCATATATTCTTTTTAATGGATTTACATTATTTACATGACATTCATCATCCTGAAAGTAAATTATTCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAAGTAGGTa                                                                                           <  1:169960/141‑1 (MQ=255)                                                    atCAAGACCATATATTCTTTTTAATGGATTTACATTATTTACATGACATTCATCATCCTGAAAGTAAATTATTCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAAGTAGGTAAATTATACGaaa                                                                               <  2:4257/141‑1 (MQ=255)                                                           ccATATATTCTTTTTAATGGATTTACATTATTTACATGACATTCATCATCCTGAAAGTAAATTATTCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAAGTAGGTAAATTATACGAAACAATTaa                                                                        <  2:183800/141‑1 (MQ=255)                                                              tatatTCTTTTTAATGGATTTACATTATTTACATGACATTCATCATCCTGAAAGTAAATTATTCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAAGTAGGTAAATTATACGAAACAATTAAAgc                                                                     <  1:66737/141‑1 (MQ=255)                                                              tatatTCTTTTTAATGGATTTACATTATTTACATGACATTCATCATCCTGAAAGTAAATTATTCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAACTAGGTAAATTATACGAAACAATTAAAgc                                                                     >  2:308782/1‑141 (MQ=255)                                                                    cTTTTTAATGGATTTACATTATTTACATGACATTCATCATCCTGAAAGTAAATTATTCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAAGTAGGTAAATTATACGAAACAATTAAAGCGCAAcc                                                               >  1:57571/1‑141 (MQ=255)                                                                          aaTGGATTTACATTATTTACATGACATTCATCATCCTGAAAGTAAATTATTCCCACCACttgtatctacgatattgtgtggtg                                                                                                                   >  2:331984‑M1/1‑59 (MQ=255)                                                                          aaTGGATTTACATTATTTACATGACATTCATCATCCTGAAAGTAAATTATTCCCACCACttgtatctacgatattgtgtggtg                                                                                                                   <  1:331984‑M1/83‑25 (MQ=255)                                                                           aTGGATTTACATTATTTACATAACATTCATCATCCTGCAAGTAAATTATCCCCACCACACAATATCGTAGATACAAGTGGTATAGAATTATACGGTAAAGTAGGTAAATTATACGCAACAATTATAGCGCAACCTAATGTa                                                        <  2:71691/141‑1 (MQ=255)                                                                                 ttACATTATTTACATGACATTCATCATCCTGAAAGTAAATTATTCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAAGTAGGTAAATTATACGAAACAATTAAAGCGCAACCTAATGTACATTTc                                                  <  1:213066/141‑1 (MQ=255)                                                                                    cATTATTTACATGACATTCATCATCCTGAAAGTAAATTATTCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAAGTAGGTAAATTATACGAAACAATTAAAGCGCAACCTAATGTACATTTCAtt                                               >  2:58571/1‑141 (MQ=255)                                                                                      ttattTACATGACATTCATCATCCTTAAAATAAATTATTCCCACCACACAATATCGTAGATACAAGTGGTAGATAATTATACTGTAAAGTAAGTAAATTATACGAAACAATTAAAGCGCAACCTAATGTACATTTCATTGa                                             <  1:33192/141‑1 (MQ=255)                                                                                                      catcatCCTGAAAGTAAATTATTCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAAGTAGGTAAATTATACGAAACAATTAACGCGCAACCTAATGTACATTTCATTGATAAAACGCGCTATGAt                             <  1:327185/141‑1 (MQ=255)                                                                                                      catcatCCTGAAAGTAAATTATTCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAAGTAGGTAAATTATACGAAACAATTAAAGCGCAACCTAATGTACATTTCATTGATAAAACGCGCTATGAt                             <  2:331662/141‑1 (MQ=255)                                                                                                                    tAAATTATTCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAAGTAGGTAAATTATACGAAACAATTAAAGCGCAACCTAATGTACATTTCATTGATAAAACGCGCTATGATTCGTTCTTTGGTAc               <  2:67903/141‑1 (MQ=255)                                                                                                                      aaTTATTCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAAGTAGGTAAATTATACGAAACAATTAAAGCGCAACCTAATGTACATTTCATTGATAAAACGCGCTATGATTCGTTCTTTGGTAccc             >  1:268586/1‑141 (MQ=255)                                                                                                                          attCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAAGTAGGTAAATTATACGAAACAATTAAAGCGCAACCTAATGTACATTTCATTGATAAAACGCGCTATGATTCGTTCTTTGGTACCCCGCt         <  1:239342/141‑1 (MQ=255)                                                                                                                            tCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAAGTAGGTAAATTATACGAAACAATTAAAGCGCAACCTAATGTACATTTCATTGATAAAACGCGCTATGATTCGTTCTTTGGTACCCCGCTTg       <  1:18624/141‑1 (MQ=255)                                                                                                                            tCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAAGTAGGTAAATTATACGAAACAATTAAAGCGCAACCTAATGTACATTTCATTGATAAAACGCGCTATGATTCGTTCTTTGGTACCCCGCTTg       <  1:191395/141‑1 (MQ=255)                                                                                                                             cccACCACACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAAGTAGGTAAATTATACGAAACAATTAAAGCGCAACCTAATGTACATTTCATTGATAAAACGCGCTATGATTCGTTCTTTGGTACCCCGCTTGa      <  1:12767/141‑1 (MQ=255)                                                                                                                              ccaccaCACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAAGTAGGTAAATTATACGAAACAATTAAAGCGCAACCTAATGTACATTTCATTGATAAAACGCGCTATGATTCGTTCTTTGGTACCCCGCTTGAt     >  2:122878/1‑141 (MQ=255)                                                                                                                               caccacACAATATCGTAGATACAAgtggtgggaataatttactttcaggatgatgaatgtcatgtaaataatgtaaatccatt                                                              >  2:331984‑M2/1‑24 (MQ=255)                                                                                                                               caccacACAATATCGTAGATACAAgtggtgggaataatttactttcaggatgatgaatgtcatgtaaataatgtaaatccatt                                                              <  1:331984‑M2/83‑60 (MQ=255)                                                                                                                                 ccacACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAAGTAGGTAAATTATACGAAACAATTAAAGCGCAACCTAATGTACATTTCATTGATAAAACGCGCTATGATTCGTTCTTTGGTACCCCGCTTGATAGt  <  2:8327/141‑1 (MQ=255)                                                                                                                                    |                                                                                                                                          GACAAAATATTGAAGATTTTATTGTTTCTCGTATCAATGACTTTAATTATTATCAAGACCATATATTCTTTTTAATGGATTTACATTATTTACATGACATTCATCATCCTGAAAGTAAATTATTCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAAGTAGGTAAATTATACGAAACAATTAAAGCGCAACCTAATGTACATTTCATTGATAAAACGCGCTATGATTCGTTCTTTGGTACCCCGCTTGATAGT  >  CP000730/2066427‑2066695

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.