New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2066558	30 (1.090)	3 (0.110)	3/248	NT	9.3%	coding (214/561 nt)	pncA	nicotinamidase
	?	CP000730	= 2066576	30 (1.130)					coding (232/561 nt)	pncA	nicotinamidase

TATTGTTTCTCGTATCAATGACTTTAATTATTATCAAGACCATATATTCTTTTTAATGGATTTACATTATTTACATGACATTCATCATCCTGAAAGTAAATTATTCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAAGTAGGTAAATTATACGAAACAATTAAAGCGCAACCTAATGTACATTTCATTGATAAAACGCGCTATGATTCGTTCTTTGGTACCCCGCTTGATAGTTTATTGAGAGAAAGAAG  >  CP000730/2066446‑2066712                                                                                                                                   |                                                                                                                                         tATTGTTTCTCGTATCAATGACTTTAATTATTATCAAGACCATATATTCTTTTTAATGGATTTACATTATTTACATGACATTCATCATCCTGAAAGTAAATTATTCCCACCACACAATATCGTAGATACAAGTGGTAgaga                                                                                                                                >  2:155652/1‑141 (MQ=255)  aTTGTTTCTCGTATCAATGACTTTAATTATTATCAAGACCATATATTCTTTTTAATGGATTTACATTATTTACATGACATTCATCATCCTGAAAGTAAATTATTCCCACCACACAATATCGTAGATACAAGTGGTAGAGaa                                                                                                                               >  2:191395/1‑141 (MQ=255)        tctcGTATCAATGACTTTAATTATTATCAAGACCATATATTCTTTTTAATGGATTTACATTATTTACATGACATTCATCATCCTGAAAGTAAATTATTCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATAc                                                                                                                         <  1:328042/141‑1 (MQ=255)          tcGTATCAATGACTTTAATTATTATCAAGACCATATATTCTTTTTAATGGATTTACATTATTTACATGACATTCATCATCCTGAAAGTAAATTATTCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATACgg                                                                                                                       <  1:260138/141‑1 (MQ=255)               tCAATGACTTTAATTATTATCAAGACCATATATTCTTTTTAATGGATTTACATTATTTACATGACATTCATCATCCTGAAAGTAAATTATTCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAAg                                                                                                                  <  2:331452/141‑1 (MQ=255)                  aTGACTTTAATTATTATCAAGACCATATATTCTTTTTAATGGATTTACATTATTTACATGACATTCATCATCCTGAAAGTAAATTATTCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATATGGttttagct                                                                                                               >  2:245508/1‑134 (MQ=255)                    gACTTTAATTATTATCAAGACCATATATTCTTTTTAATGGATTTACATTATTTACATGACATTCATCATCCTGAAAGTAAATTATTCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAAGTAGGt                                                                                                             <  1:41659/141‑1 (MQ=255)                     aCTTTAATTATTATCAAGACCATATATTCTTTTTAATGGATTTACATTATTTACATGACATTCATCATCCTGAAAGTAAATTATTCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAAGTAGGTa                                                                                                            <  1:169960/141‑1 (MQ=255)                                 atCAAGACCATATATTCTTTTTAATGGATTTACATTATTTACATGACATTCATCATCCTGAAAGTAAATTATTCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAAGTAGGTAAATTATACGaaa                                                                                                <  2:4257/141‑1 (MQ=255)                                        ccATATATTCTTTTTAATGGATTTACATTATTTACATGACATTCATCATCCTGAAAGTAAATTATTCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAAGTAGGTAAATTATACGAAACAATTaa                                                                                         <  2:183800/141‑1 (MQ=255)                                           tatatTCTTTTTAATGGATTTACATTATTTACATGACATTCATCATCCTGAAAGTAAATTATTCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAAGTAGGTAAATTATACGAAACAATTAAAgc                                                                                      <  1:66737/141‑1 (MQ=255)                                           tatatTCTTTTTAATGGATTTACATTATTTACATGACATTCATCATCCTGAAAGTAAATTATTCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAACTAGGTAAATTATACGAAACAATTAAAgc                                                                                      >  2:308782/1‑141 (MQ=255)                                                 cTTTTTAATGGATTTACATTATTTACATGACATTCATCATCCTGAAAGTAAATTATTCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAAGTAGGTAAATTATACGAAACAATTAAAGCGCAAcc                                                                                >  1:57571/1‑141 (MQ=255)                                                        aTGGATTTACATTATTTACATAACATTCATCATCCTGCAAGTAAATTATCCCCACCACACAATATCGTAGATACAAGTGGTATAGAATTATACGGTAAAGTAGGTAAATTATACGCAACAATTATAGCGCAACCTAATGTa                                                                         <  2:71691/141‑1 (MQ=255)                                                              ttACATTATTTACATGACATTCATCATCCTGAAAGTAAATTATTCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAAGTAGGTAAATTATACGAAACAATTAAAGCGCAACCTAATGTACATTTc                                                                   <  1:213066/141‑1 (MQ=255)                                                                 cATTATTTACATGACATTCATCATCCTGAAAGTAAATTATTCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAAGTAGGTAAATTATACGAAACAATTAAAGCGCAACCTAATGTACATTTCAtt                                                                >  2:58571/1‑141 (MQ=255)                                                                   ttattTACATGACATTCATCATCCTTAAAATAAATTATTCCCACCACACAATATCGTAGATACAAGTGGTAGATAATTATACTGTAAAGTAAGTAAATTATACGAAACAATTAAAGCGCAACCTAATGTACATTTCATTGa                                                              <  1:33192/141‑1 (MQ=255)                                                                                   catcatCCTGAAAGTAAATTATTCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAAGTAGGTAAATTATACGAAACAATTAACGCGCAACCTAATGTACATTTCATTGATAAAACGCGCTATGAt                                              <  1:327185/141‑1 (MQ=255)                                                                                   catcatCCTGAAAGTAAATTATTCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAAGTAGGTAAATTATACGAAACAATTAAAGCGCAACCTAATGTACATTTCATTGATAAAACGCGCTATGAt                                              <  2:331662/141‑1 (MQ=255)                                                                                                 tAAATTATTCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAAGTAGGTAAATTATACGAAACAATTAAAGCGCAACCTAATGTACATTTCATTGATAAAACGCGCTATGATTCGTTCTTTGGTAc                                <  2:67903/141‑1 (MQ=255)                                                                                                   aaTTATTCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAAGTAGGTAAATTATACGAAACAATTAAAGCGCAACCTAATGTACATTTCATTGATAAAACGCGCTATGATTCGTTCTTTGGTAccc                              >  1:268586/1‑141 (MQ=255)                                                                                                       attCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAAGTAGGTAAATTATACGAAACAATTAAAGCGCAACCTAATGTACATTTCATTGATAAAACGCGCTATGATTCGTTCTTTGGTACCCCGCt                          <  1:239342/141‑1 (MQ=255)                                                                                                         tCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAAGTAGGTAAATTATACGAAACAATTAAAGCGCAACCTAATGTACATTTCATTGATAAAACGCGCTATGATTCGTTCTTTGGTACCCCGCTTg                        <  1:191395/141‑1 (MQ=255)                                                                                                         tCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAAGTAGGTAAATTATACGAAACAATTAAAGCGCAACCTAATGTACATTTCATTGATAAAACGCGCTATGATTCGTTCTTTGGTACCCCGCTTg                        <  1:18624/141‑1 (MQ=255)                                                                                                          cccACCACACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAAGTAGGTAAATTATACGAAACAATTAAAGCGCAACCTAATGTACATTTCATTGATAAAACGCGCTATGATTCGTTCTTTGGTACCCCGCTTGa                       <  1:12767/141‑1 (MQ=255)                                                                                                           ccaccaCACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAAGTAGGTAAATTATACGAAACAATTAAAGCGCAACCTAATGTACATTTCATTGATAAAACGCGCTATGATTCGTTCTTTGGTACCCCGCTTGAt                      >  2:122878/1‑141 (MQ=255)                                                                                                            caccacACAATATCGTAGATACAAgtggtgggaataatttactttcaggatgatgaatgtcatgtaaataatgtaaatccatt                                                                               >  2:331984‑M2/1‑24 (MQ=255)                                                                                                            caccacACAATATCGTAGATACAAgtggtgggaataatttactttcaggatgatgaatgtcatgtaaataatgtaaatccatt                                                                               <  1:331984‑M2/83‑60 (MQ=255)                                                                                                              ccacACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAAGTAGGTAAATTATACGAAACAATTAAAGCGCAACCTAATGTACATTTCATTGATAAAACGCGCTATGATTCGTTCTTTGGTACCCCGCTTGATAGt                   <  2:8327/141‑1 (MQ=255)                                                                                                                    aaTATCGTAGATACAAGTGGTAGAGAATTATACGGTAAAGTAGGTAAATTATACGAAACAATTAAAGCGCAACCTAATGTACATTTCATTGATAAAACGCGCTATGATTCGTTCTTTGGTACCCCGCTTGATAGTTTATTg             >  1:21419/1‑141 (MQ=255)                                                                                                                     atatCGTAGATACAAggggtgggaataatttactttcaggatgatgaatgtcatgtaaataatgtaactccattaaaaagaatatatggtcttgataataattaaagtcattgatacgagaaacaataaaatattcaatct            <  2:260414‑M2/141‑127 (MQ=255)                                                                                                                     atatCGTAGATACAAGTGGTAGAGAATTATACGGTAAAGTAGGTAAATTATACGAAACAATTAAAGCGCAACCTAATGTACATTTCATTGATAAAACGCGCTATGATTCGTGCTTTGGTACCCCGCTTGATAGTTTATTga            >  2:39604/1‑141 (MQ=255)                                                                                                                       atCGTAGATACAAGTGGTAGAGAATTATACGGTAAAGTAGGTAAATTATACGAAACAATTAAAGCGCAACCTAATGTACATTTCATTGATAAAACGCGCTATGATTCGTTCTTTGGTACCCCGCTTGATAGTTTATTgaga          <  2:279075/141‑1 (MQ=255)                                                                                                                             gATACAAGTGGTAGAGAATTATACGGTAAAGTAGGTAAATTATACGAAACAATTAAAGCGCAACCTAATGTACATTTCATTGATAAAACGCGCTATGATTCGTTCTTTGGTACCCCGCTTGATAGTTTATTGAGagaaaga    >  1:297065/1‑141 (MQ=255)                                                                                                                               tACAAGTGGTAGAGAATTATACGGTAAAGTAGGTAAATTATACGAAACAATTAAAGCGCAACCTAATGTACATTTCATTGATAAAACGCGCTATGATTCGTTCTTTGGTACCCCGCTTGATAGTTTATTGAGAGTaagaag  <  2:274401/141‑1 (MQ=255)                                                                                                                                   |                                                                                                                                         TATTGTTTCTCGTATCAATGACTTTAATTATTATCAAGACCATATATTCTTTTTAATGGATTTACATTATTTACATGACATTCATCATCCTGAAAGTAAATTATTCCCACCACACAATATCGTAGATACAAGTGGTAGAGAATTATACGGTAAAGTAGGTAAATTATACGAAACAATTAAAGCGCAACCTAATGTACATTTCATTGATAAAACGCGCTATGATTCGTTCTTTGGTACCCCGCTTGATAGTTTATTGAGAGAAAGAAG  >  CP000730/2066446‑2066712

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.