mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,190 | 0 | A | G | 29.2% | 22.2 / 14.8 | 25 | intergenic (+396/+246) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,191 | 0 | A | C | 28.0% | 21.5 / 16.4 | 25 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 526,792 | 0 | A | C | 20.0% | 178.7 / 31.0 | 77 | S1178R (AGC→CGC) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| Marginal new junction evidence (lowest skew 10 of 31 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 29 (0.450) | 19 (0.310) | 17/566 | 3.5 | 35.0% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 43 (0.710) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1096961 = | 81 (1.270) | 11 (0.230) | 4/438 | 6.9 | 19.8% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097503 | 30 (0.640) | intergenic (+674/+62) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 1643672 = | 81 (1.270) | 5 (0.080) | 5/584 | 8.2 | 6.2% | coding (633/1050 nt) | ydfU | Qin prophage; uncharacterized protein |
| ? | NC_000913 | 1643799 = | 71 (1.140) | coding (506/1050 nt) | ydfU | Qin prophage; uncharacterized protein | |||||
| * | ? | NC_000913 | 4503437 = | 88 (1.380) | 4 (0.060) | 4/576 | 8.7 | 4.5% | noncoding (79/1426 nt) | IS4 | repeat region |
| ? | NC_000913 | 4503467 = | 85 (1.380) | noncoding (49/1426 nt) | IS4 | repeat region | |||||
| * | ? | NC_000913 | 2757407 = | 94 (1.470) | 4 (0.060) | 4/576 | 8.7 | 4.2% | intergenic (+7/+237) | intA/yfjH | CP4‑57 prophage; integrase/CP4‑57 prophage; uncharacterized protein |
| ? | NC_000913 | 2757433 = | 92 (1.490) | intergenic (+33/+211) | intA/yfjH | CP4‑57 prophage; integrase/CP4‑57 prophage; uncharacterized protein | |||||
| * | ? | NC_000913 | = 4580042 | 52 (0.810) | 4 (0.060) | 4/584 | 8.8 | 7.4% | intergenic (‑202/+26) | symE/hsdS | toxic peptide regulated by antisense sRNA symR/specificity determinant for hsdM and hsdR |
| ? | NC_000913 | = 4580047 | 50 (0.800) | intergenic (‑207/+21) | symE/hsdS | toxic peptide regulated by antisense sRNA symR/specificity determinant for hsdM and hsdR | |||||
| * | ? | NC_000913 | 4171197 = | 0 (0.000) | 6 (0.100) | 4/588 | 8.9 | 100% | noncoding (2557/2904 nt) | rrlB | 23S ribosomal RNA of rrnB operon |
| ? | NC_000913 | 4212594 = | NA (NA) | noncoding (2552/2904 nt) | rrlE | 23S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913 | = 2726628 | NA (NA) | 6 (0.100) | 4/588 | 8.9 | NA | noncoding (2557/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | = 2726633 | NA (NA) | noncoding (2552/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 1567268 = | 58 (0.910) | 4 (0.060) | 4/588 | 8.9 | 6.6% | intergenic (‑128/+236) | dosC/yddW | diguanylate cyclase, cold‑ and stationary phase‑induced oxygen‑dependent biofilm regulator/liprotein, glycosyl hydrolase homolog |
| ? | NC_000913 | 1567291 = | 57 (0.910) | intergenic (‑151/+213) | dosC/yddW | diguanylate cyclase, cold‑ and stationary phase‑induced oxygen‑dependent biofilm regulator/liprotein, glycosyl hydrolase homolog | |||||
| * | ? | NC_000913 | = 1764686 | 66 (1.030) | 3 (0.050) | 3/576 | 9.4 | 4.5% | intergenic (‑300/+248) | sufA/ydiH | Fe‑S cluster assembly protein/uncharacterized protein |
| ? | NC_000913 | = 1764701 | 65 (1.060) | intergenic (‑315/+233) | sufA/ydiH | Fe‑S cluster assembly protein/uncharacterized protein | |||||