New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 998447	250 (1.140)	8 (0.040)	7/560	27.0	3.2%	intergenic (+40/‑43)	elfA/elfD	laminin‑binding fimbrin subunit/putative periplasmic pilin chaperone
	?	NC_000913	= 998451	246 (1.160)					intergenic (+44/‑39)	elfA/elfD	laminin‑binding fimbrin subunit/putative periplasmic pilin chaperone
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below cutoff threshold.

TGCAACGTTCACCTTTAATGGCACTGCGGATACTACTCAGATTACAGCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTAACAAATTTCCATATTAACTATTATTAATAGAACTCATTAATTGTTTTATTAATTAGTACCCCTCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/998140‑998447 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccctccagAACACTGGAGGGGTACTAATTAATAAAACAATTAATGAGTTCTATTAATAATAGTTAATATGGAAATTTGTTACCGCATTCACATTACCTGAAGTCGCTTTCCCCGTAGCGATATAATCAACTTTAAAAGTCAACGTCTGATCTCCATCCTGCAACAAAATGTTCCCGGTTTCTGTGTCTGGCGTGATGGCCGTTGTACCATCATTCATATACATTTGCAGGGCCACGTTTGTAGCAGCATCAGATGAGGCCTGGTTAGCAAACGCTGTAATCTGAGTAGTATCCGCAGTGCCATTA  <  NC_000913/998451‑998155                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TGCAACGTTCACCTTTAATGGCACTGCGGATACTACTCAGATTACAGCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGATGCAGGATGCAGATCAGACGTTTACTTTTATAGTTGATTATATCGCTTGGGGGAAAGCGCCTTCAGGTAATGTGAATGCGGTAACAAATGTCCATATTAACTATTATTAATAGAACTCTTTAATTGTATTATTAATTAGTACC                                                                                                                                                                                                                                                                                                                  >  2:1024565/1‑301  GCAACGTTCACCTTTAATGGCACTGCGGATACTACTCAGATTACAGCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGAACAGACGTTGACTTTTAAAGTTGATTATATAGTTACGGGGAAAGTGCCTGCCGGTAATGTGAATGCGGGAACAAATTTCCATATTAATGCTTATTAAATGACCTACATGATTGTTTTATTAATATGTACtc                                                                                                                                                                                                                                                                                                                 >  1:53322/1‑299      CGTTCACCTTTAATGGCACTGCGGATACTACTCAGATTACAGCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCGTTACGGGGAAAGCGACTTAAGGTAATGTGAATGCGGTAACAAATTTCCATTTTAACTATTAGTAATAAAAATCATTAATTGTTTTATTAATTAGTACACTTCC                                                                                                                                                                                                                                                                                                             >  1:475959/1‑301      CGTTCACCTTTAACGGGAATGCGGATACTTCTCAGATTACAGAGTTTGCTAACCAGGCCGCATCTGATGCTGCTCCAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTAACAAATTTCCATATTAACTATTATTAATAGAACTCATTAATTGTTTTATTAATTAGTACCCCTCC                                                                                                                                                                                                                                                                                                             <  2:1381088/301‑1            CCTTTAATGGCACTGCGGATACTACTCAGATTACAGCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACCCAGAAACCGGGCACATTTTTTTGCAGGATGGAGATCAGACGTTGACTTTTCAAGTTGATGATATCGCTACGGGGAAAGCGACTTCCGGTCATGTGTATGAGGTAACAAATATACATATGAACTATTATTAATAGAAACCATTATTTGTTTTATTAATTAGTTCCCCAACAGAgtt                                                                                                                                                                                                                                                                                                       >  1:268830/1‑298                     GCACTGCGGATACTACACCGATTACAGCGTTTGCTAACCAGGCCTCAGCTGAGGCTGCTACAAACGGGGCCCTGCAAATGTATATGAATGACGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTAACAAATTTCCATATTAACTATTATTAATAGAACTCATTAATTGTTTTATTAATTAGTACCCCTCCAGAACACTGGAGGGG                                                                                                                                                                                                                                                                                              <  1:776061/301‑1                                                                                           CCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTTAATGCGGTAACAAATTTCCATATTAACTATTATTAATAGAACTTATTAATTGTTTTATTAATTATTACTACTCAAGAACACTGGAGGAGTACTAATTAATACAACAATTAATGATTTCTATTAATAATAGTTAATATGGAATTTGTTTACCGttttccc                                                                                                                                                                                                                        >  1:1316964/1‑294                                                                                                                ttGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGTATGGAGATCAGAGCTTGACCTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCACGTAATGTGAATGCGATAACAAATTTCCATATTAACTATTATTAATAGAACTCATTAATTGTTTTATTAATTAGTACCCCTCCAGAACACTGGAGTGGTACTAATTAATAAAACAATTAATGAGTTCTATTAATAATAGTTAATATGGAAATTTGTTACCGCATTCACATTACCTGAAGTCGCTTTCC                                                                                                                                                                                                    <  2:1317325/298‑1                                                                                                                                                                         AGATCAGACGTTTACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTAACAAATTTCCATATTAACTATTATTAATAGAACTCATTAATTGTTTTATTAATTAGTACCCCTCCAGAACACTGGAGGGGTACTAATTAATAAAACAATTAATGAGTTCTATTAATAATAGTTAATATGGAAATTTG                                                                                                                                                                                                                                     <  1:1320035/210‑1                                                                                                                                                                         AGATCAGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTAACAAATTTCCATATTAACTATTATTAATAGAACTCATTAATTGTTTTATTAATTAGTACCCCTCCAGAACACTGGAGGGGTACTAATTAATAAAACAATTAATGAGTTCTATTAATAATAGTTACTATGGAAATTTG                                                                                                                                                                                                                                     >  2:1320396/1‑210                                                                                                                                                                                                                                                                                  aaaccgacgcccttccgaacaaaaattCCCTCCAAAACACTGGGAGGGTACTAATTAATAAAACAATTAATGAGTTCTATTAATAATAGTTAATATGGAAATTTGTTACCGCATTCACATTACCTGAAGTCGCTTTCCCCGTAGCGATATAATCAACTTTAAAAGTCAACGTCTGATCTCCATCCTGCAACAAAATGTTCCCGGTTTCTGTGTCTGGCGTGATGGCCGTTGTACCATCATTCATATACATTTGCAGGGCCACGTTTGTAGCAGCATCAGATGAGGCCTGGTTAGCAAACGC                                 <  1:992094/274‑1                                                                                                                                                                                                                                                                                                aaatttatatTACCCCACCAGAACACTGGAGGGTTACAAATTAATAAAAAAATTAATGGTTTTCAATAATAATATTTAATATGGAAATTTGTTACCGCATTAAAATTACCTGAAGTCGCTTTCCCCGTAGAGAAATAATCAACTGTAAAAGTCCACGTCTGATCTCCAACCTGCAATAAAATGTTCCCGGTTTCTGTGTCTGGCTTGATGGCCGTTGTATCATCATTCATATACATTTGCAGGGCCACGTTTGTAGCAGCATCAGCTGAGGCCTGGTTAGCAAACGCTGTAATCTGAGTAG                   <  1:1281870/291‑1                                                                                                                                                                                                                                                                                                         aaACCCCACCAGAAAACTGGAGGGGTACGAATTAATAAAAAGATGAATGAGTTCTATTAATAAATGTTAATATGGAAATTTGTTACCGCATTCACATCACCTGAAGTCGCTTTCCCCGTAGCGATATAATCAACTTTAAAAGTCAACGTCTGATCTCCATCCTGCAACAAAATGTTCCCGGTTTCTGTGTCTGGCGTGATGGCCGTTGTACCATCATTCATATACATTTGCAGGGCCACGTTTGTAGCAGCATCAGATGAGGCCTGGTTAGCAAACGCTGTAATCTGAGTAGTATCCGCAG          <  1:696908/299‑1                                                                                                                                                                                                                                                                                                             CCCTCCAGAACACTGGAGGGGTACTAATTAATAAAACAATTAATGAGTTCTATTAATAATAGTTAATATGGAAATTTGTTACCGCATTCACATTACCTGAAGTCGCTTTCCCCGTAGCGATATAATCAACTTTAAAAGTCAACGTCTGATCTCCATCCTGCAACAAAATGTTCCCGGTTTCTGTGTCTGGCGTGATGGCCGTTGTACCATCAGTCATATCCATTTGCAGGGCCACGTTTGTAGCAGCATCAGATGAGGCCTGGTTAGCAAACGCTGTAATCTGAGTAGTATCCGCAGTGCC      >  2:1590670/1‑301                                                                                                                                                                                                                                                                                                              CCTCAAGAAAACAGAAGGGGTACTAATTAATAAAACAATTAATGAGTTCTATTAATAAGAGTTAATATGGAAATTTGTTACCGCATTCACATTACCTGAAGTCGCTTTCCCCGTAGCGATATAATCAACTTTAAAAGTCAACGTCTGATCTCCATCCTGCAACAAAATGTTCCCGGTTTCAGTGTCTGGCGTGATGGCCGTTGTACCATCATTCATATACATTTGCAGGGCCACGTTTGTAGCAGCATCAGATGAGGCCTGGTTAGCAAACGCTGTAATCTGAGTAGTATCCGCAGTGCCA     <  1:494214/301‑1                                                                                                                                                                                                                                                                                                                TCCAGAACACTGGAGGGGTACTAATTAATAAAACAATTAATGAGTTCTATTAATAATAGTTAATATGGAAATTTGTTACCGCATTCACATTACCTGAAGTCGCTTTCCCCGTAGCGATATAATCAACTTTAAAAGTCAACGTCTGATCTCCATCCTGCAACAAAATGTTCCCGGTTTCTGTGTCTGGCGTGATGGCCGTTGTACCATCATTCATATACATTTGCAGTGCCACGTTTGTAGCAGCATCAGATGAGGCCTGTTTAGCAAACGCTGTAATCTGAGTATTACACGCAGTGCCATT   >  1:532424/1‑301                                                                                                                                                                                                                                                                                                                TCCAGAACACTGGAGGGGTACTAATTAATAAAACAATTAATGAGTTCTATTAATAATAGTTAATATGGAAATTTGTTACCGCATTCACATTACCTGAAGTCGCTTTCCCCGTAGCGATATAATCAACTTTAAAAGTCAACGTCTGATCTCCATCCTGCAACAAAATGTTCCCGGTTTCTGTGTCTGGCGTGATGGCCGTTGTACCATCATTCATATACATTTGCAGGGCCACGTTTGTAGCAGCATCAGATGAGGCCTGGTTAGCAAACGCTGTACTCTGAGTAGTATCCGCAGTGCCTTT   >  2:476069/1‑301                                                                                                                                                                                                                                                                                                                TCCAGAACACTGGAGGGGTACTAATTAATAAAACAATTAATGAGTTCTATTAATAATAGTTAATATGGAAATTTGTTACCGCATTCACATTACCTGAAGTCGCTTTCCCCGTAGCGATATAATCAACTTTAAAAGTCAACGTCTGATCTCCATCCTGCAACAAAATGTTCCCGGTTTCTGTGTCTGGCGTGATGGCCGTTGTACCATCATTCACATACATTTGCAGTGCCACGTTTGTAGCAGCATCAGATGAGGCCTGGTTAGCAAACGCTGTAATCTGAGTAGTATCCGCAGTGCCATT   >  1:745000/1‑301                                                                                                                                                                                                                                                                                                                 CCAGAACACTGTATGGGTACTAATTAATAAAACAATTAATGAGTTCTATTAATAATAGTTAATATGGAAATTTGTTACCGCATTCACATTACCTGAAGTCGCTTTCCCCGTAGCGATATAATCAACTTTAAAAGTCAACGTCTGATCGCCATCCTGCAACAAAATGTTCCCGGTTTCTGTGTCTGGCGTGATGGCCGTTGTACCATCATTCATATACATTTGCAGGGCCACGTTTGTAGCAG                                                             <  1:1760049/242‑1                                                                                                                                                                                                                                                                                                                  CAGAACACTGGAGGGGTACTAATTAATAAAACAATTAATGAGTTCTATTAATAATAGTTAATATGGAAATTTGTTACCGCATTCACATTACCTGAAGTCGCTTTCCCCGTAGCGATATAATCAACTTTAAAAGTCAACGTCTGATCTCCATCCTGCAACAAAATGTTCCCGGTTTCTGTGTCTGGCGTGATGGCCGTTGTACCATCATTCATATACATTTGCAGGGCCACGTTTGTAGCAGCATCAGATGAGGCCTGGTTAGCAAACGCTGTAATCTGAGTAGTAACCGCAGTGCCATTA  >  1:1855756/1‑300                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TGCAACGTTCACCTTTAATGGCACTGCGGATACTACTCAGATTACAGCGTTTGCTAACCAGGCCTCATCTGATGCTGCTACAAACGTGGCCCTGCAAATGTATATGAATGATGGTACAACGGCCATCACGCCAGACACAGAAACCGGGAACATTTTGTTGCAGGATGGAGATCAGACGTTGACTTTTAAAGTTGATTATATCGCTACGGGGAAAGCGACTTCAGGTAATGTGAATGCGGTAACAAATTTCCATATTAACTATTATTAATAGAACTCATTAATTGTTTTATTAATTAGTACCCCTCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/998140‑998447 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccctccagAACACTGGAGGGGTACTAATTAATAAAACAATTAATGAGTTCTATTAATAATAGTTAATATGGAAATTTGTTACCGCATTCACATTACCTGAAGTCGCTTTCCCCGTAGCGATATAATCAACTTTAAAAGTCAACGTCTGATCTCCATCCTGCAACAAAATGTTCCCGGTTTCTGTGTCTGGCGTGATGGCCGTTGTACCATCATTCATATACATTTGCAGGGCCACGTTTGTAGCAGCATCAGATGAGGCCTGGTTAGCAAACGCTGTAATCTGAGTAGTATCCGCAGTGCCATTA  <  NC_000913/998451‑998155

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.