| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3915783 | 183 (1.200) | 3 (0.020) | 3/520 | NT | 1.7% | coding (190/420 nt) | atpC | F1 sector of membrane‑bound ATP synthase, epsilon subunit |
| ? | NC_000913 | 3915788 = | 169 (1.130) | coding (185/420 nt) | atpC | F1 sector of membrane‑bound ATP synthase, epsilon subunit | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATTCAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTGAGAGCTGCTAATGTGCTCTTCAGCCTTACGTTTCGCTTCCATGGCTCGCGCTTCGTCGAGATCCTGGCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3915479‑3915783‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agataAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTAAAGTTTTTTGGCTTTTTCCACAGCTTCTTCGATGGAACCGACCATGTAGAACGCCTGCTCCGGCAGGTGATCGTATTCGCCTTCCATGATGC > NC_000913/3915788‑3916087 ATTCAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCGACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGATGCCTGAGCGTAATCTACGTCGCCGTGAGAGCTGCTAATGTGCTCTTCAGCCTTACTTTTCGCTTCCATGGCTCGCGCTTCGTCGAGATCCTGGCCGCGAATTTCGGTGTCGGCCAGAACGGTCCAGTTGCCAGGCTGCGCTTCCAGACTGCCGCCAGACA > 2:194729/1‑301ATTCAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCCGCTGCGCGATCGCTTTGGCCAGTGCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTGAGAGCTGCTAATGTGCTCTTCAGCCTTACGTTTCGCTTCCCTGGCTCTCGCTTCGTCGAGATACTGTCCTCGCATTTCGGTGTCGGCCCGAACGGTACCGTTGCCCGGCTGCCCTTCCACAATGCAGCCAGCCA > 2:377592/1‑301ATTCAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTGAGAGCTGCTAATGTGCTCTTCAGCCTTACGTTTCGCTTCCATGGCTCGCGCTTCGTCGAGATCCTGGCCGCGACTTGCGGTGTCTGCCAGCACGGTCAAGTTGCCAGGCTGCCCTTCCAAAATGCCGCCGGACA > 2:1279644/1‑301ATTCAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGACCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTGAGAGCTGCCAATGTGCTCTTCAGCCTTACGTTTCGCTTCCATGGCTCGCGCTTCGTCGCGCTCCTGGCCGCGCATTGCGGTGTAGGCCAGAACGGTCACGTTCCCAGGCTGCACTTCAACAATGCCGCCAGACA > 1:466748/1‑301 GGTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGAAGACGCCTGAGCGTAATCTACGTCGCCGTGAGAGCTGCTAATGTGCTCTTCCGCCTTACGTTTCGCTTCCATGGCTCGCGCTTCGTCGAGATCCTGGCGGCGGATTGCGGTGTCGTCCAGGACGGCCACGTTACCCGGCTGCACTTCCAGAAGGCCGCCAGCCAGATAgctaga > 2:339923/1‑295 GTGCTCTTCAGCCTTACGTTTCGCTTCCATGGCTCGCGCTTCGTCGCGATCCTGGCCGCGAATTGCGGTGTCGCACAGAACGGTCACGTTGCCAGGCTGCACTTCCAGAATGGCGCCAGACCGATAAACTCTTCGTGACCGTGCTGTTTCGCGATGTGAATCATACCAGGCTTGATGGAGGTGATCAGGGGTGCGTGGCTAGGTTAGATCCCCAGTGCACCTTCGCTCCCCGTTCCCGGGCTTTTCCCGACCCGCCCAGAGAACTTTTGTTGCTATCCGCTGCCGCCGTCCAGGTGGTAAG > 1:412502/1‑301 CTTCAGCCTTACGTTTCGCTTCCATGGCTCGCGCTTCGTCGAGATCCTGGCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGCCGCCGTACAGGTGGTACGTactt > 1:1087198/1‑297 CTTAAGCCTTCCGTTTCGCTTCCATGGCTCGCGGTTCGTCGAGATCCTGGCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTC < 2:1087228/298‑1 agtGATAAACCAGTCGTGACCTTGCTGTTTCACGATGCTAAGCAGACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTAAAGTTTTTTGGCTTTTTCCACAGCTTCTTCGATGGAACCGACCATGTAGAACGCCTGCTCCGGCAGGTGATTGTATTCGCC < 2:524076/293‑1 agAGATAAACGCTTCGTGACCGTGGTGTTTCACGATGCGAATCAGACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGGAGATCCCCAGTGCACCTTCGCGACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTAAAGTTTTTTGGCTTTTTCCACAGCTTCTTCGATGGAACCGACCATGTAGAACGCCTGCTCCGGCAGGTGATCGTATTCGCC < 1:1145257/294‑1 aaATAAACCCTTCGGGACCGTGCCGTTTGACGAGTCGAATCATACCAGGCTTAAGGGCGGTGAGCAGCGGTGCGTTGCCAGGGTAGAACCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTAAAGTTTTTTGGCTTTTTCCACAGCTTCTTCGATGGAACCGACCATGTAGAACGCCTGCTCCGGCAGGTGATCGTATTCGCCTTCCATG < 1:544362/299‑1 AGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTAAAGTTTTTTGGCTTTTTCCACAGCTTCTTCGATGGAACCGACCATGTAGAACGCCTGCTCCGGCCGGTGATCGTATTCGCCTTCCAT > 2:544370/1‑300 GATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGCTTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGCCTTTGCCATATCCCCCTCCGATTAAGGCGTTAAAGTTTTTTGGCTTTTTCCACACCTTCTTCGATGGAACCGACCATGTGACACGCCTGCTCCGGCAGGTCATCGTATTCCCCTTCCcttt > 1:1494313/1‑297 GATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGACCATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTAAAGTTTTTTGGCTTTTTCCACAGCTTCTTCGATGGAACCGACCATGTAGAACGCCTGCTCCGGCAGGTGCTTGTATTCGCCGTCCCTGA > 1:1453839/1‑301 GATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCGGTGGGTAAGTCATTGCC > 2:1341271/1‑187 GATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGCTTAAGGCGTTAAAGTTTTTTGGCTTTTTCCACAGCTTCTTCGATGGCACCGACCATGTAGAACGCCTGCCCCGCCAGGTGATCGTCTTCGCCTTCCCTGA > 1:476332/1‑301 GATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCC < 1:1341231/187‑1 GATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGAGCTGACGACGTCCAGGTGGGAAGTCATTGCCATATACCCCTCCGATTAAGGCGTTAAAGTTTTTTGGCTTTTTCCCCAGCTTCTTCGATGGAACCGACC > 1:603258/1‑255 GATAAACTCTTCGTGACCGGGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTAAAGTTTTTTGGCTTTTTCCACAGCTTCTTCGATGGAACCGACC < 2:603266/255‑1 ATAAACTCTTCGTGACCGTGCTTTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTAAAGTTTTTTGGCTTTTTCCACAGCTTCTTCGATGGAACCGACCATGTAGAACGCCTGCTCCGGCAGGTGATCGTATTCGCCTTCCATG < 2:402836/299‑1 AAACTCTTCGTGACCGTGCTGTTTCACGCTGCGAATCATACCAGGCTTAATGGCTGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTAAAGTTTTTTGGCTTTTTCCACAGCTTCTTCGATGGAACCGACCATGTAGAACGCCTGCTCCGGCAGGTGATCGTATTCGCCTTCCATGATGC < 1:751467/301‑1 AAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCAGACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTAAAGTTTTTTGGCTTTTTCCACAGCTTCTTCGATGGAACCGACCATGTAGAACGCCTGCTCCGGCAGGTGATCGTATTCGCCTTCCATGATG < 2:1253716/300‑1 ATTCAGGACGGGTCACACGCGCAAAAAAAAGCCAGCCTGTTTCCAGACTGGCTTTTGTGCTTTTCAAGCCGGTGTTACATCGCTTTTTTGGTCAACTCGATAACGCGCAGCTGCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTGAGAGCTGCTAATGTGCTCTTCAGCCTTACGTTTCGCTTCCATGGCTCGCGCTTCGTCGAGATCCTGGCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3915479‑3915783‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agataAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATTTTCTCGACCAGACCAGAGAACATTTGTTGCTCTGCGCTGACGACGTCCAGGTGGTAAGTCATTGCCATATCACCCTCCGATTAAGGCGTTAAAGTTTTTTGGCTTTTTCCACAGCTTCTTCGATGGAACCGACCATGTAGAACGCCTGCTCCGGCAGGTGATCGTATTCGCCTTCCATGATGC > NC_000913/3915788‑3916087 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |