mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 30.8% | 70.6 / 46.2 | 66 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,190 | 0 | A | G | 23.2% | 73.8 / 26.4 | 60 | intergenic (+396/+246) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,191 | 0 | A | C | 22.8% | 67.3 / 29.1 | 60 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 11 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1096961 = | 92 (0.810) | 30 (0.360) | 16/438 | 6.8 | 29.8% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097503 | 74 (0.890) | intergenic (+674/+62) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 4542690 | 157 (1.390) | 14 (0.130) | 14/580 | 10.3 | 9.6% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 112 (1.020) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4542682 = | 151 (1.340) | 12 (0.110) | 11/580 | 11.7 | 8.4% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 115 (1.050) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 2032684 | 111 (0.980) | 6 (0.050) | 5/578 | 15.4 | 5.1% | coding (396/696 nt) | yedJ | putative HD superfamily phosphohydrolase |
| ? | NC_000913 | = 2032734 | 118 (1.080) | coding (346/696 nt) | yedJ | putative HD superfamily phosphohydrolase | |||||
| * | ? | NC_000913 | = 3038850 | 98 (0.870) | 5 (0.050) | 5/586 | 15.5 | 4.9% | coding (894/897 nt) | xerD | site‑specific tyrosine recombinase |
| ? | NC_000913 | = 3038858 | 98 (0.880) | coding (886/897 nt) | xerD | site‑specific tyrosine recombinase | |||||
| * | ? | NC_000913 | = 192641 | 125 (1.110) | 5 (0.050) | 5/586 | 15.5 | 4.2% | intergenic (+61/‑231) | pyrH/frr | uridylate kinase/ribosome recycling factor |
| ? | NC_000913 | = 192767 | 104 (0.940) | intergenic (+187/‑105) | pyrH/frr | uridylate kinase/ribosome recycling factor | |||||
| * | ? | NC_000913 | 2998987 = | 134 (1.190) | 5 (0.050) | 4/582 | 16.2 | 3.7% | noncoding (71/74 nt) | glyU | tRNA‑Gly |
| ? | NC_000913 | 2999059 = | 127 (1.150) | intergenic (‑2/+77) | glyU/ygeR | tRNA‑Gly/LysM domain‑containing M23 family putative peptidase; septation lipoprotein | |||||
| * | ? | NC_000913 | 2460105 = | 126 (1.110) | 4 (0.040) | 4/582 | 16.2 | 3.2% | coding (365/1311 nt) | fadI | beta‑ketoacyl‑CoA thiolase, anaerobic, subunit |
| ? | NC_000913 | 2460311 = | 116 (1.050) | coding (159/1311 nt) | fadI | beta‑ketoacyl‑CoA thiolase, anaerobic, subunit | |||||
| * | ? | NC_000913 | = 2693433 | 113 (1.000) | 4 (0.040) | 4/586 | 16.3 | 3.3% | coding (2111/3888 nt) | purL | phosphoribosylformyl‑glycineamide synthetase |
| ? | NC_000913 | = 2693565 | 127 (1.150) | coding (1979/3888 nt) | purL | phosphoribosylformyl‑glycineamide synthetase | |||||
| * | ? | NC_000913 | = 2935222 | 123 (1.090) | 3 (0.030) | 3/578 | 17.0 | 2.5% | coding (988/1317 nt) | fucP | L‑fucose transporter |
| ? | NC_000913 | = 2935361 | 116 (1.060) | coding (1127/1317 nt) | fucP | L‑fucose transporter | |||||