mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,190 | 0 | A | G | 28.7% | 77.4 / 56.7 | 91 | intergenic (+396/+246) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,191 | 0 | A | C | 27.3% | 65.6 / 68.4 | 91 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,268 | 0 | T | C | 27.2% | 150.9 / 47.7 | 94 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 3,608,696 | 0 | T | G | 22.9% | 295.6 / 27.7 | 145 | intergenic (+47/+55) | zntA/tusA | zinc, cobalt and lead efflux system/mnm(5)‑s(2)U34‑tRNA 2‑thiolation sulfurtransferase |
| * | NC_000913 | 3,608,715 | 0 | A | G | 20.3% | 322.3 / 19.1 | 148 | intergenic (+66/+36) | zntA/tusA | zinc, cobalt and lead efflux system/mnm(5)‑s(2)U34‑tRNA 2‑thiolation sulfurtransferase |
| Marginal new junction evidence (lowest skew 10 of 14 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1096961 = | 157 (0.890) | 52 (0.400) | 24/438 | 10.5 | 31.1% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097503 | 116 (0.900) | intergenic (+674/+62) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 4542682 = | 189 (1.080) | 18 (0.110) | 18/580 | 17.7 | 8.1% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 223 (1.310) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 4542690 | 192 (1.090) | 9 (0.050) | 9/580 | 23.2 | 4.2% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 222 (1.300) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 803336 = | 149 (0.850) | 6 (0.030) | 6/592 | 25.9 | 3.8% | intergenic (+16/‑167) | ybhI/ybhJ | putative DASS family tricarboxylate or dicarboxylate transporter/aconitase family protein |
| ? | NC_000913 | 803435 = | 158 (0.910) | intergenic (+115/‑68) | ybhI/ybhJ | putative DASS family tricarboxylate or dicarboxylate transporter/aconitase family protein | |||||
| * | ? | NC_000913 | 596994 = | 144 (0.820) | 6 (0.030) | 6/592 | 25.9 | 3.8% | intergenic (+21/‑137) | cusC/cusF | copper/silver efflux system, outer membrane component/periplasmic copper‑ and silver‑binding protein |
| ? | NC_000913 | 803435 = | 158 (0.910) | intergenic (+115/‑68) | ybhI/ybhJ | putative DASS family tricarboxylate or dicarboxylate transporter/aconitase family protein | |||||
| * | ? | NC_000913 | = 2192485 | 190 (1.080) | 3 (0.020) | 3/526 | 26.8 | 1.8% | intergenic (‑263/+30) | yehD/yehE | putative fimbrial‑like adhesin protein/DUF2574 family protein |
| ? | NC_000913 | = 2192449 | 159 (1.030) | intergenic (‑227/+66) | yehD/yehE | putative fimbrial‑like adhesin protein/DUF2574 family protein | |||||
| * | ? | NC_000913 | = 729852 | 140 (0.800) | 5 (0.030) | 4/576 | 27.3 | 3.3% | coding (270/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3762271 | 155 (0.920) | coding (89/4134 nt) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 2306639 | 179 (1.020) | 4 (0.020) | 4/584 | 27.6 | 2.2% | coding (116/1647 nt) | mqo | malate dehydrogenase, FAD/NAD(P)‑binding domain |
| ? | NC_000913 | = 2306801 | 187 (1.090) | intergenic (‑47/+171) | mqo/yojI | malate dehydrogenase, FAD/NAD(P)‑binding domain/microcin J25 efflux ABC transporter permease/ATPase | |||||
| * | ? | NC_000913 | = 3995071 | 198 (1.130) | 4 (0.020) | 4/586 | 27.7 | 2.1% | coding (310/825 nt) | dapF | diaminopimelate epimerase |
| ? | NC_000913 | = 3995136 | 183 (1.060) | coding (375/825 nt) | dapF | diaminopimelate epimerase | |||||
| * | ? | NC_000913 | = 1409596 | 149 (0.850) | 5 (0.030) | 4/586 | 27.7 | 3.3% | coding (86/1374 nt) | dbpA | ATP‑dependent RNA helicase, specific for 23S rRNA |
| ? | NC_000913 | = 1409654 | 150 (0.870) | coding (144/1374 nt) | dbpA | ATP‑dependent RNA helicase, specific for 23S rRNA | |||||