mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 310 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 226,357 | 0 | A | G | 79.6% | 2.6 / 53.9 | 108 | noncoding (599/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| * | NC_000913 | 226,308 | 0 | C | T | 79.4% | 94.0 / 149.3 | 254 | noncoding (550/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| * | NC_000913 | 226,307 | 0 | G | T | 79.0% | 90.1 / 177.5 | 255 | noncoding (549/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| * | NC_000913 | 226,363 | 0 | G | C | 78.8% | 2.1 / 68.4 | 99 | noncoding (605/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| * | NC_000913 | 226,299 | 0 | A | C | 78.8% | 90.0 / 163.5 | 259 | noncoding (541/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| * | NC_000913 | 226,301 | 0 | G | A | 78.8% | 87.1 / 163.3 | 259 | noncoding (543/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| * | NC_000913 | 226,305 | 0 | A | . | 78.7% | 80.1 / 290.4 | 255 | noncoding (547/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| * | NC_000913 | 226,262 | 0 | A | T | 77.4% | 69.4 / 146.7 | 201 | noncoding (504/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| * | NC_000913 | 226,278 | 0 | G | A | 77.1% | 77.7 / 152.4 | 223 | noncoding (520/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| * | NC_000913 | 226,280 | 0 | A | G | 76.7% | 81.6 / 140.9 | 223 | noncoding (522/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| * | NC_000913 | 226,248 | 0 | C | A | 72.6% | 33.9 / 152.6 | 164 | noncoding (490/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| * | NC_000913 | 226,545 | 0 | C | T | 72.4% | 62.1 / 65.5 | 76 | noncoding (787/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| * | NC_000913 | 226,552 | 0 | A | G | 72.4% | 60.1 / 59.8 | 76 | noncoding (794/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| * | NC_000913 | 226,554 | 0 | C | T | 72.4% | 57.9 / 56.4 | 76 | noncoding (796/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| * | NC_000913 | 226,403 | 0 | C | T | 71.4% | 8.1 / 25.2 | 35 | noncoding (645/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| * | NC_000913 | 226,404 | 0 | T | A | 71.4% | 10.2 / 26.7 | 35 | noncoding (646/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| * | NC_000913 | 226,555 | 0 | G | C | 69.6% | 73.7 / 80.9 | 79 | noncoding (797/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| * | NC_000913 | 226,574 | 0 | C | T | 69.6% | 84.1 / 81.5 | 92 | noncoding (816/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| * | NC_000913 | 4,038,817 | 0 | G | A | 68.0% | 49.5 / 70.1 | 75 | noncoding (1299/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon |
| * | NC_000913 | 226,530 | 0 | C | A | 67.9% | 54.6 / 65.1 | 56 | noncoding (772/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1207805 | 49 (0.940) | 8 (0.170) | 8/266 | 6.3 | 16.9% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 35 (0.750) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1207790 = | 48 (0.920) | 5 (0.110) | 5/266 | 7.9 | 11.4% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 35 (0.750) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||