mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 190 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 357,890 | 0 | C | A | 58.3% | 4.9 / 30.2 | 24 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 4,042,993 | 0 | C | T | 57.7% | 2.4 / 22.9 | 26 | F193F (TTC→TTT) | srkA | Cpx stress response Thr/Ser protein kinase; MazF antagonist protein |
| * | NC_000913 | 925,900 | 0 | A | G | 54.8% | 42.8 / 57.5 | 43 | noncoding (72/88 nt) | serW | tRNA‑Ser |
| * | NC_000913 | 4,622,250 | 0 | A | G | 52.6% | 24.2 / 48.4 | 38 | E161G (GAG→GGG) | yjjJ | putative protein kinase |
| * | NC_000913 | 4,622,255 | 0 | A | G | 52.6% | 40.3 / 54.3 | 38 | N163D (AAT→GAT) | yjjJ | putative protein kinase |
| * | NC_000913 | 29,496 | 0 | T | A | 47.2% | 31.2 / 25.4 | 36 | intergenic (+301/‑155) | dapB/carA | dihydrodipicolinate reductase/carbamoyl phosphate synthetase small subunit, glutamine amidotransferase |
| * | NC_000913 | 3,862,661 | 0 | T | G | 47.2% | 8.5 / 15.0 | 36 | pseudogene (943/1617 nt) | glvC | pseudogene, arbutin specific enzyme IIC component of PTS;enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system, arbutin‑like IIB component; PTS system, arbutin‑like IIC component |
| * | NC_000913 | 718,690 | 0 | T | G | 45.7% | 44.1 / 19.8 | 35 | T591P (ACC→CCC) | speF | ornithine decarboxylase isozyme, inducible |
| * | NC_000913 | 354,288 | 0 | T | G | 45.3% | 72.2 / 18.9 | 53 | V528G (GTG→GGG) | prpE | propionate‑‑CoA ligase |
| * | NC_000913 | 753,125 | 0 | T | A | 43.9% | 55.3 / 16.2 | 41 | intergenic (‑330/+60) | ybgD/gltA | putative fimbrial‑like adhesin protein/citrate synthase |
| * | NC_000913 | 3,813,272 | 0 | C | T | 43.6% | 47.0 / 26.1 | 55 | S181L (TCG→TTG) | dfp | fused 4'‑phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase, FMN‑binding |
| * | NC_000913 | 3,556,207 | 0 | T | C | 42.9% | 54.6 / 15.5 | 42 | S215G (AGT→GGT) | rtcA | RNA 3'‑terminal phosphate cyclase |
| * | NC_000913 | 4,538,109 | 0 | A | C | 42.5% | 81.5 / 12.1 | 48 | G219G (GGT→GGG) | nanM | N‑acetylneuraminic acid mutarotase |
| * | NC_000913 | 213,341 | 0 | A | G | 42.2% | 62.6 / 14.1 | 45 | G337G (GGA→GGG) | tilS | tRNA(Ile)‑lysidine synthetase |
| * | NC_000913 | 4,336,901 | 0 | T | A | 41.9% | 33.2 / 18.5 | 31 | Y44F (TAT→TTT) | adiC | arginine:agmatine antiporter |
| * | NC_000913 | 1,755,862 | 0 | C | A | 41.9% | 74.0 / 20.6 | 43 | S55R (AGC→AGA) | pykF | pyruvate kinase I |
| * | NC_000913 | 4,286,478 | 0 | A | C | 41.8% | 87.8 / 10.3 | 56 | G298G (GGT→GGG) | acs | acetyl‑CoA synthetase |
| * | NC_000913 | 2,903,692 | 0 | C | A | 41.7% | 51.1 / 20.0 | 36 | intergenic (+318/+1055) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| * | NC_000913 | 4,112,578 | 0 | T | G | 41.4% | 100.1 / 10.9 | 58 | G88G (GGT→GGG) | yiiR | DUF805 family putative inner membrane protein |
| * | NC_000913 | 1,755,871 | 0 | T | A | 41.3% | 56.2 / 28.1 | 46 | G58G (GGT→GGA) | pykF | pyruvate kinase I |