mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 131 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 366,526 | 0 | T | G | 54.8% | 25.2 / 44.4 | 31 | T329P (ACC→CCC) | lacI | lactose‑inducible lac operon transcriptional repressor |
| * | NC_000913 | 689,514 | 0 | A | C | 53.3% | 17.0 / 21.8 | 15 | G456G (GGT→GGG) | lnt | apolipoprotein N‑acyltransferase |
| * | NC_000913 | 2,434,882 | 0 | T | G | 50.0% | 67.2 / 12.9 | 50 | Y252S (TAC→TCC) | truA | tRNA pseudouridine(38‑40) synthase |
| * | NC_000913 | 2,252,657 | 0 | C | T | 48.6% | 30.7 / 20.8 | 35 | L320F (CTT→TTT) | yeiI | putative kinase |
| * | NC_000913 | 2,252,660 | 0 | G | T | 48.5% | 41.3 / 19.3 | 33 | E321* (GAA→TAA) | yeiI | putative kinase |
| * | NC_000913 | 32,653 | 0 | T | C | 47.4% | 41.7 / 13.9 | 38 | S613P (TCC→CCC) | carB | carbamoyl‑phosphate synthase large subunit |
| * | NC_000913 | 753,125 | 0 | T | A | 47.2% | 59.5 / 29.7 | 53 | intergenic (‑330/+60) | ybgD/gltA | putative fimbrial‑like adhesin protein/citrate synthase |
| * | NC_000913 | 1,097,581 | 0 | A | G | 46.9% | 69.4 / 19.9 | 50 | noncoding (72/88 nt) | serX | tRNA‑Ser |
| * | NC_000913 | 3,760,384 | 0 | A | C | 46.3% | 39.6 / 17.3 | 41 | V289G (GTG→GGG) | selA | selenocysteine synthase |
| * | NC_000913 | 3,412,906 | 0 | T | A | 45.8% | 26.2 / 10.3 | 24 | Y187F (TAT→TTT) | acrS | acrAB operon transcriptional repressor |
| * | NC_000913 | 29,496 | 0 | T | A | 44.7% | 50.3 / 19.0 | 38 | intergenic (+301/‑155) | dapB/carA | dihydrodipicolinate reductase/carbamoyl phosphate synthetase small subunit, glutamine amidotransferase |
| * | NC_000913 | 213,341 | 0 | A | G | 44.7% | 46.9 / 13.9 | 38 | G337G (GGA→GGG) | tilS | tRNA(Ile)‑lysidine synthetase |
| * | NC_000913 | 287,172 | 0 | G | C | 44.4% | 61.7 / 18.5 | 45 | P128P (CCG→CCC) | yagH | CP4‑6 prophage; putative xylosidase/arabinosidase |
| * | NC_000913 | 436,516 | 0 | C | A | 44.0% | 32.1 / 10.6 | 25 | Q295K (CAA→AAA) | thiL | thiamine monophosphate kinase |
| * | NC_000913 | 925,900 | 0 | A | G | 42.9% | 91.3 / 13.8 | 56 | noncoding (72/88 nt) | serW | tRNA‑Ser |
| * | NC_000913 | 75,079 | 0 | C | T | 42.5% | 47.3 / 27.2 | 40 | L134L (CTG→CTA) | thiB | thiamine/thiamine pyrophosphate/thiamine monophosphate ABC transporter periplasmic binding protein |
| * | NC_000913 | 3,412,898 | 0 | C | T | 42.3% | 19.2 / 20.1 | 26 | A190T (GCC→ACC) | acrS | acrAB operon transcriptional repressor |
| * | NC_000913 | 775,709 | 0 | T | C | 41.5% | 51.9 / 11.8 | 41 | I186T (ATC→ACC) | tolQ | membrane spanning protein in TolA‑TolQ‑TolR complex |
| * | NC_000913 | 3,206,435 | 0 | C | T | 41.5% | 50.1 / 22.9 | 41 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 3,285,853 | 0 | G | T | 41.2% | 55.2 / 16.6 | 34 | A126S (GCC→TCC) | agaD | N‑acetylgalactosamine‑specific enzyme IID component of PTS |