mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 115 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,376,505 | 0 | A | C | 61.8% | 23.6 / 43.7 | 34 | T158P (ACC→CCC) | ycjR | putative TIM alpha/beta barrel enzyme |
| * | NC_000913 | 4,258,974 | 0 | T | G | 57.9% | 24.9 / 45.6 | 38 | G411G (GGT→GGG) | dinF | oxidative stress resistance protein; putative MATE family efflux pump; UV and mitomycin C inducible protein |
| * | NC_000913 | 1,755,871 | 0 | T | A | 55.6% | 13.8 / 51.9 | 37 | G58G (GGT→GGA) | pykF | pyruvate kinase I |
| * | NC_000913 | 1,413,735 | 0 | A | T | 52.3% | 29.7 / 72.3 | 44 | Y2* (TAT→TAA) | ydaC | DUF1187 family protein, Rac prophage; putative double‑strand break reduction protein |
| * | NC_000913 | 2,434,882 | 0 | T | G | 51.4% | 32.5 / 54.4 | 35 | Y252S (TAC→TCC) | truA | tRNA pseudouridine(38‑40) synthase |
| * | NC_000913 | 73,581 | 0 | A | C | 50.0% | 56.9 / 13.8 | 48 | V314G (GTA→GGA) | thiP | thiamine/thiamine pyrophosphate ABC transporter permease |
| * | NC_000913 | 3,705,661 | 0 | T | C | 50.0% | 32.9 / 12.1 | 34 | I44V (ATC→GTC) | dppB | dipeptide/heme ABC transporter permease |
| * | NC_000913 | 4,604,350 | 0 | C | T | 46.0% | 29.4 / 16.3 | 37 | S64F (TCT→TTT) | bglJ | bgl operon transcriptional activator |
| * | NC_000913 | 3,812,792 | 0 | C | A | 45.5% | 36.8 / 15.3 | 33 | T21N (ACC→AAC) | dfp | fused 4'‑phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase, FMN‑binding |
| * | NC_000913 | 4,536,197 | 0 | A | T | 44.2% | 60.7 / 41.4 | 52 | intergenic (+166/+417) | yjhR/nanS | pseudogene, helicase family; putative frameshift suppressor/9‑O‑acetyl N‑acetylneuraminic acid esterase |
| * | NC_000913 | 3,206,435 | 0 | C | T | 44.1% | 28.7 / 19.4 | 34 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 3,665,702 | 0 | C | A | 43.9% | 33.9 / 24.6 | 43 | A37S (GCG→TCG) | gadX | acid resistance regulon transcriptional activator; autoactivator |
| * | NC_000913 | 3,556,200 | 0 | G | A | 43.8% | 49.8 / 20.2 | 48 | S217F (TCC→TTC) | rtcA | RNA 3'‑terminal phosphate cyclase |
| * | NC_000913 | 3,604,937 | 0 | T | G | 43.8% | 46.4 / 13.3 | 33 | V182G (GTG→GGG) | rsmD | 16S rRNA m(2)G966 methyltransferase, SAM‑dependent |
| * | NC_000913 | 1,415,806 | 0 | G | T | 43.6% | 63.5 / 12.8 | 39 | N527K (AAC→AAA) | recE | Rac prophage; exonuclease VIII, 5' to 3' specific dsDNA exonuclease |
| * | NC_000913 | 4,604,344 | 0 | C | T | 43.2% | 32.5 / 17.1 | 37 | S62F (TCT→TTT) | bglJ | bgl operon transcriptional activator |
| * | NC_000913 | 3,556,207 | 0 | T | C | 42.3% | 63.2 / 17.2 | 52 | S215G (AGT→GGT) | rtcA | RNA 3'‑terminal phosphate cyclase |
| * | NC_000913 | 3,947,850 | 0 | C | T | 42.2% | 57.4 / 20.8 | 45 | E40K (GAA→AAA) | hdfR | flhDC operon transcriptional repressor |
| * | NC_000913 | 1,755,862 | 0 | C | A | 42.1% | 50.2 / 19.0 | 38 | S55R (AGC→AGA) | pykF | pyruvate kinase I |
| * | NC_000913 | 1,413,761 | 0 | C | T | 41.5% | 47.0 / 24.3 | 41 | G56E (GGA→GAA) | ralR | Rac prophage; restriction alleviation protein |