mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 300 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 357,890 | 0 | C | A | 54.3% | 19.0 / 47.2 | 35 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 3,206,435 | 0 | C | T | 51.6% | 38.6 / 95.1 | 64 | intergenic (‑179/‑28) | ttdR/ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| * | NC_000913 | 2,642,689 | 0 | T | G | 51.1% | 64.0 / 80.9 | 46 | A52A (GCA→GCC) | rodZ | MreB assembly cytoskeletal protein |
| * | NC_000913 | 2,434,882 | 0 | T | G | 50.9% | 66.5 / 90.6 | 56 | Y252S (TAC→TCC) | truA | tRNA pseudouridine(38‑40) synthase |
| * | NC_000913 | 357,880 | 0 | T | C | 50.0% | 28.0 / 13.1 | 32 | K271E (AAA→GAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 993,917 | 0 | A | C | 47.4% | 72.5 / 21.9 | 57 | V43G (GTG→GGG) | ssuB | aliphatic sulfonate ABC transporter ATPase |
| * | NC_000913 | 1,222,596 | 0 | G | A | 46.0% | 21.7 / 26.7 | 37 | F13F (TTC→TTT) | ymgD | uncharacterized protein |
| * | NC_000913 | 2,678,039 | 0 | T | G | 45.6% | 82.9 / 19.8 | 57 | N108T (AAC→ACC) | yphE | putative sugar ABC transporter ATPase |
| * | NC_000913 | 357,875 | 0 | A | T | 45.2% | 29.3 / 16.3 | 32 | N272K (AAT→AAA) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 2,903,692 | 0 | C | A | 44.8% | 73.3 / 48.8 | 58 | intergenic (+318/+1055) | ygcE/queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| * | NC_000913 | 364,526 | 0 | C | A | 44.7% | 60.7 / 19.8 | 47 | G594C (GGC→TGC) | lacZ | beta‑D‑galactosidase |
| * | NC_000913 | 3,261,055 | 0 | A | C | 43.9% | 118.8 / 10.9 | 68 | V455G (GTG→GGG) | tdcE | pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase |
| * | NC_000913 | 115,797 | 0 | C | A | 43.3% | 93.6 / 38.8 | 67 | E435* (GAA→TAA) | hofB | T2SE secretion family protein; P‑loop ATPase superfamily protein |
| * | NC_000913 | 4,332,309 | 0 | A | C | 42.2% | 66.1 / 21.4 | 45 | L322V (TTA→GTA) | basS | sensory histidine kinase in two‑component regulatory system with BasR |
| * | NC_000913 | 2,984,441 | 0 | A | C | 42.2% | 100.9 / 32.2 | 64 | G384G (GGT→GGG) | yqeF | short chain acyltransferase |
| * | NC_000913 | 1,736,784 | 0 | T | C | 42.1% | 52.5 / 12.0 | 38 | G169G (GGA→GGG) | ydhP | putative MFS transporter, inner membrane protein |
| * | NC_000913 | 73,581 | 0 | A | C | 41.7% | 87.8 / 11.8 | 48 | V314G (GTA→GGA) | thiP | thiamine/thiamine pyrophosphate ABC transporter permease |
| * | NC_000913 | 3,375,152 | 0 | C | G | 41.7% | 142.9 / 21.4 | 72 | A95G (GCC→GGC) | dcuD | putative transporter |
| * | NC_000913 | 1,487,163 | 0 | C | T | 41.5% | 64.1 / 24.1 | 53 | intergenic (+200/‑72) | hrpA/ydcF | putative ATP‑dependent helicase/DUF218 superfamily protein, SAM‑binding |
| * | NC_000913 | 213,341 | 0 | A | G | 40.7% | 77.3 / 12.6 | 54 | G337G (GGA→GGG) | tilS | tRNA(Ile)‑lysidine synthetase |