Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,199,680 IS1 (+) +8 bp coding (1120‑1127/1128 nt) intE ← e14 prophage; putative integrase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 257908 =NA (NA)118 (1.170) 101/298 0.0 100% noncoding (768/768 nt) IS1 repeat region
?NC_000913 1199680 = 0 (0.000)coding (1127/1128 nt) intE e14 prophage; putative integrase
* ? NC_000913 = 11996870 (0.000)92 (0.910) 79/298 0.3 100% coding (1120/1128 nt) intE e14 prophage; putative integrase
?NC_000913 = 1979270 NA (NA)noncoding (1/768 nt) IS1 repeat region

Only 100 of 206 total aligned reads displayed.

TCGATTTTAGGTGATCTTCTCTGTGATATTTCACGTCTTACCAGTAACTGATATGGCTGTCCGCCGCTCGCTTAAAGTGGACTTTTTAGTTTTTATCATGTGCGGTGAGAAATTCAATGTGGCGTTGAGATGCTTAAAGGTTCACAACGCTACTTTGCTCCATCCTTTACCTCGATCATCATGATAACGATCGGTTTGTTGTTGTGTTTTATGACCAAGTAGTTTTTGTGTGTCTAACCCCTGTTCTTTATACAGACGTTCAGATAAAGACCTTTGCTCATGGAATGTCGCAGGTG  >  NC_000913/1199538‑1199833
                                                                                                                                                     |                                                                                                                                                  
gcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCACAACGCt                                                                                                                                                   <  1:449260‑M2/9‑1 (MQ=255)
 cggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTa                                                                                                                                                  <  2:10536‑M2/10‑1 (MQ=255)
 cGATTTTAGGTGATCTTCTCTGTGATATTTCACGTCTTACCAGTAACTGATATGGCTGTCCGCCGCTCGCTTAAAGTGGACTTTTTAGTTTTTATCATGTGCGGTGAGAAATTCAATGTGGCGTTGAGATGCTTAAAGGTTCACAACGCgg                                                                                                                                                  >  1:1554619‑M1/1‑149 (MQ=255)
  gATTTTAGGTGATCTTCTCTGTGATATTTCACGTCTTACCAGTAACTGATATGGCTGTCCGCCGCTCGCTTAAAGTGGACTTTTTAGTTTTTATCATGTGCGGTGAGAAATTCAATGTGGCGTTGAGATGCTTAAAGGTTCACAACGCgg                                                                                                                                                  >  1:1498388‑M1/1‑148 (MQ=255)
        acctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCt                                                                                                                                           >  2:1573804‑M2/135‑151 (MQ=255)
           tgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCTcc                                                                                                                                         >  1:1172730‑M2/132‑150 (MQ=255)
           tGATCTTCTCTGTGATATTTCACGTCTTACCAGTAACTGATATGGCTGTCCGCCGCTCGCTTAAAGTGGACTTTTTAGTTTTTATCATGTGCGGTGAGAAATTCAATGTGGCGTTGAGATGCTTAAAGGTTCACAACGCggtgatgctgcc                                                                                                                                        >  1:1027212‑M1/1‑139 (MQ=255)
            gaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCa                                                                                                                                        <  1:424266‑M2/20‑1 (MQ=255)
             aatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCATc                                                                                                                                      <  1:21697‑M2/22‑1 (MQ=255)
             aatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCATc                                                                                                                                      <  1:43367‑M2/22‑1 (MQ=255)
                ctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCATCCtt                                                                                                                                   >  2:837645‑M2/127‑151 (MQ=255)
                 tctcTGTGATATTTCACGTCTTACCAGTAACTGATATGGCTGTCCGCCGCTCGCTTAAAGTGGACTTTTTAGTTTTTATCATGTGCGGTGAGAAATTCAATGTGGCGTTGAGATGCTTAAAGGTTCACAACGCggtgatgctgccaac                                                                                                                                     <  2:840281‑M1/148‑16 (MQ=255)
                  gaggcagcacctggcacggctgggacggaaggcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacgctatcaataagtaggagtcattaccCACAACGCTACTTTGCTCCATCCt                                                                                                                                    <  1:956294‑M2/24‑1 (MQ=255)
                   aggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCATCCTTTAc                                                                                                                                <  1:574194‑M2/28‑1 (MQ=255)
                     tgtgATATTTCACGTCTTACCAGTAACTGCTATGGCTGTCCGCCGCTCGCTTAAAGTGGACTTTTTAGTTTTTATCATGTGCGGTGAGAAATTCAATGTGGCGTTGAGATGCTTAAAGGTTCACAACGCggtgatgctgccaacttactg                                                                                                                               >  1:1396896‑M1/1‑129 (MQ=255)
                      gtgATATTTCACGTCTTACCAGTAACTGATATGGCTGTCCGCCGCTCGCTTAAAGTGGACTTTTTAGTTTTTATCATGTGCGGTGAGAAATTCAATGTGGCGTTGAGATGCTTAAAGGTTCACAACGCggtgatgctgccaacttact                                                                                                                                <  1:320411‑M1/148‑21 (MQ=255)
                      cagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCATCCTTTACCTc                                                                                                                             >  2:1346819‑M2/121‑151 (MQ=255)
                       agcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCATCCTTTACCTCg                                                                                                                            <  1:352667‑M2/32‑1 (MQ=255)
                       agcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCATCCTTTACCTCg                                                                                                                            <  1:242‑M2/32‑1 (MQ=255)
                            ctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCATCCTTTACCTCGatcat                                                                                                                       >  2:179380‑M2/115‑151 (MQ=255)
                             tggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCATCCTTTACCTCGatcatc                                                                                                                      >  1:538094‑M2/114‑151 (MQ=255)
                              ggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCATCCTTTACCTCGatcat                                                                                                                       <  2:299964‑M2/37‑1 (MQ=255)
                                aCGTCTTACCAGTAACTGATATGGCTGTCCGCCGCTCGCTTAAAGTGGACTTTTTAGTTTTTATCATGTGCGGTGAGAAATTCAATGTGGCGTTGAGATGCTTAAAGGTTCACAACGCggtgatgctgccaacttactgatttagtgtatg                                                                                                                   <  2:920207‑M1/151‑34 (MQ=255)
                                aCGTCTTACCAGTAACTGATATGGCTGTCCGCCGCTCGCTTAAAGTGGACTTTTTAGTTTTTATCATGTGCGGTGAGAAATTCAATGTGGCGTTGAGATGCTTAAAGGTTCACAACGCggtgatgctgccaacttactgatttagtgtatg                                                                                                                   <  2:1565213‑M1/151‑34 (MQ=255)
                                  gTCTTACCAGTAACTGATATGGCTGTCCGCCGCTCGCTTAAAGTGGACTTTTTAGTTTTTATCATGTGCGGTGAGAAATTCAATGTGGCGTTGAGATGCTTAAAGGTTCACAACGCggtgatgctgccaacttactgatttagtgtatgat                                                                                                                 <  2:446021‑M1/151‑36 (MQ=255)
                                  gTCTTACCAGTAACTGATATGGCTGTCCGCCGCTCGCTTAAAGTGGACTTTTTAGTTTTTATCATGTGCGGTGAGAAATTCAATGTGGCGTTGAGATGCTTAAAGGTTCACAACGCggtgatgctgccaacttactgatttagtgtatgat                                                                                                                 >  1:924874‑M1/1‑116 (MQ=255)
                                  cggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCATCCTTTACCTCGATCATCATGAt                                                                                                                 <  1:1239736‑M2/43‑1 (MQ=255)
                                   ggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCATCCTTTACCTCGATCATCATGATa                                                                                                                <  2:1212317‑M2/44‑1 (MQ=255)
                                   ggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCATCCTTTACCTCGATCATCATGATa                                                                                                                <  2:1096386‑M2/44‑1 (MQ=255)
                                      tACCAGTAACTGATATGGCTGTCCGCCGCTCGCTTAAAGTGGACTTTTTAGTTTTTATCATGTGCGGTGAGAAATTCAATGTGGCGTTGAGATGCTTAAAGGTTCACAACGCggtgatgctgccaacttactgatttagtgtatgatg                                                                                                                <  1:1062131‑M1/148‑37 (MQ=255)
                                      tACCAGTAACTGATATGGCTGTCCGCCGCTCGCTTAAAGTGGACTTTTTAGTTTTTATCATGTGCGGTGAGAAATTCAATGTGGCGTTGAGATGCTTAAAGGTTCACAACGCggtgatgctgccaacttactgatttagtgtatgatg                                                                                                                <  2:734084‑M1/148‑37 (MQ=255)
                                      tACCAGTAACTGATATGGCTGTCCGCCGCTCGCTTAAAGTGGACTTTTTAGTTTTTATCATGTGCGGTGAGAAATTCAATGTGGCGTTGAGATGCTTAAAGGTTCACAACGCggtgatgctgccaacttactgatttagtgtatgatg                                                                                                                <  2:1252743‑M1/148‑37 (MQ=255)
                                       gggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCATCCTTTACCTCGATCATCATGATAAc                                                                                                              <  1:1259032‑M2/46‑1 (MQ=255)
                                       gggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCATCCTTTACCTCGATCATCATGATAACg                                                                                                             <  1:1081381‑M2/47‑1 (MQ=255)
                                       aCCAGTAACTGATATGGCTGTCCGCCGCTCGCTTAAAGTGGACTTTTTAGTTTTTATCATGTGCGGTGAGAAATTCAATGTGGCGTTGAGATGCTTAAAGGTTCACAACGCggtgatgctgccaacttactgatttagtgtatgatggtgt                                                                                                            <  1:848559‑M1/151‑41 (MQ=255)
                                           gTAACTGATATGGCTGTCCGCCGCTCGCTTAAAGTGGACTTTTTAGTTTTTATCATGTGCGGTGAGAAATTCAATGTGGCGTTGAGATGCTTAAAGGTTCACAACGCggtgatgctgccaacttactgatttagtgtatgatggtgttttt                                                                                                        <  2:247702‑M1/151‑45 (MQ=255)
                                           cggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCATCCTTTACCTCGATCATCATGATAACGATCgg                                                                                                        >  1:1224661‑M2/100‑151 (MQ=255)
                                                 gATATGGCTGTCCGCCGCTCGCTTAAAGTGGACTTTTTAGTTTTTATCATGTGCGGTGAGAAATTCAATGTGGCGTTGAGATGCTTAAAGGTTCACAACGCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggt                                                                                                   <  1:1102411‑M1/150‑50 (MQ=255)
                                                      gtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCATCCTTTACCTCGATCATCATGATAACGATCGGTttgttgttg                                                                                              <  2:554261‑M2/62‑1 (MQ=255)
                                                       gCTGTCCGCCGCTCGCTTAAAGTGGACTTTTTAGTTTTTATCATGTGCGGTGAGAAATTCAATGTGGCGTTGAGATGCTTAAAGGTTCACAACGCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccag                                                                                            <  1:125381‑M1/151‑57 (MQ=255)
                                                         gttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCATCCTTTACCTCGATCATCATGATAACGATCGGTTTGTTGTTGTGtt                                                                                          <  2:232043‑M2/66‑1 (MQ=255)
                                                           tctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCATCCTTTACCTCGATCATCATGATAACGATCGGTTTGTTGTTGTGtttt                                                                                        >  2:1241398‑M2/84‑151 (MQ=255)
                                                              caaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCATCCTTTACCTCGATCATCATGATAACGATCGGTTTGTTGTTGTGtttt                                                                                        <  2:1183280‑M2/68‑1 (MQ=255)
                                                              caaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCATCCTTTACCTCGATCATCATGATAACGATCGGTTTGTTGTTGTGtttt                                                                                        <  1:984811‑M2/68‑1 (MQ=255)
                                                              caaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCATCCTTTACCTCGATCATCATGATAACGATCGGTTTGTTGTTGTGTTTTAt                                                                                      <  2:650382‑M2/70‑1 (MQ=255)
                                                                   tcgctTAAAGTGGACTTTTTAGTTTTTATCATGTGCGGTGAGAAATTCAATGTGGCGTTGAGATGCTTAAAGGTTCACAACGCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgttt                                                                                >  2:1517520‑M1/1‑83 (MQ=255)
                                                                        tAAAGTGGACTTTTTAGTTTTTATCATGTGCGGTGAGAAATTCAATGTGGCGTTGAGATGCTTAAAGGTTCACAACGCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctat                                                                            >  1:500792‑M1/1‑78 (MQ=255)
                                                                        ggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCATCCTTTACCTCGATCATCATGATAACGATCGGTTTGTTGTTGTGTTTTATGACCAagtagt                                                                           >  1:1166681‑M2/71‑151 (MQ=255)
                                                                         aaaGTGGACTTTTTAGTTTTTATCATGTGCGGTGAGAAATTCAATGTGGCGTTGAGATGCTTAAAGGTTCACAACGCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatca                                                                          <  1:1311407‑M1/151‑75 (MQ=255)
                                                                          agctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCATCCTTTACCTCGATCATCATGATAACGATCGGTTTGTTGTTGTGTTTTATGACCAAGTAGttt                                                                         <  2:857426‑M2/83‑1 (MQ=255)
                                                                           gctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCATCCTTTACCTCGATCATCATGATAACGATCGGTTTGTTGTTGTGTTTTATGACCAAGTAGtttt                                                                        <  2:1380097‑M2/84‑1 (MQ=255)
                                                                             tgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCATCCTTTACCTCGATCATCATGATAACGATCGGTTTGTTGTTGTGTTTTATGACCAAGTAGTTTTtg                                                                      >  1:658854‑M2/66‑151 (MQ=255)
                                                                               gACTTTTTAGTTTTTATCATGTGCGGTGAGAAATTCAATGTGGCGTTGAGATGCTTAAAGGTTCACAACGCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtc                                                                    >  2:359857‑M1/1‑71 (MQ=255)
                                                                               catgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCATCCTTTACCTCGATCATCATGATAACGATCGGTTTGTTGTTGTGTTTTATGACCAAGTAGTTTTtgt                                                                     <  1:1000481‑M2/87‑1 (MQ=255)
                                                                                atgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCATCCTTTACCTCGATCATCATGATAACGATCGGTTTGTTGTTGTGTTTTATGACCAAGTAGTTTTtgtgt                                                                   >  1:728849‑M2/63‑151 (MQ=255)
                                                                                aCTTTTTAGTTTTTATCATGTGCGGTGAGAAATTCAATGTGGCGTTGAGATGCTTAAAGGTTCACAACGCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtcc                                                                   >  2:288231‑M1/1‑70 (MQ=255)
                                                                                 tgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCATCCTTTACCTCGATCATCATGATAACGATCGGTTTGTTGTTGTGTTTTATGACCAAGTAGTTTTtgtgtg                                                                  >  2:110116‑M2/62‑151 (MQ=255)
                                                                                 cTTTTTAGTTTTTATCATGTGCGGTGAGAAATTCAATGTGGCGTTGAGATGCTTAAAGGTTCACAACGCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccc                                                                  >  2:210066‑M1/1‑69 (MQ=255)
                                                                                 cTTTTTAGTTTTTATCATGTGCGGTGAGAAATTCAATGTGGCGTTGAGATGCTTAAAGGTTCACAACGCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccc                                                                  >  2:1305663‑M1/1‑69 (MQ=255)
                                                                                    tttAGTTTTTATCATGTGCGGTGAGAAATTCAATGTGGCGTTGAGATGCTTAAAGGTTCACAACGCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcc                                                               >  1:1352603‑M1/1‑66 (MQ=255)
                                                                                      tAGTTTTTATCATGTGCGGTGAGAAATTCAATGTGGCGTTGAGATGCTTAAAGGTTCACAACGCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctg                                                             >  2:98333‑M1/1‑64 (MQ=255)
                                                                                      aagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCATCCTTTACCTCGATCATCATGATAACGATCGGTTTGTTGTTGTGTTTTATGACCAAGTAGTTTTTGTGTGTCTa                                                              >  1:1238227‑M2/57‑150 (MQ=255)
                                                                                        gtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCATCCTTTACCTCGATCATCATGATAACGATCGGTTTGTTGTTGTGTTTTATGACCAAGTAGTTTTTGTGTGTCTAAcc                                                           <  1:880264‑M2/97‑1 (MQ=255)
                                                                                          catcgggcattatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCATCCTTTACCTCGATCATCATGATAACGATCGGTTTGTTGTTGTGTTTTATGACCAAGTAGTTTTTGTGTGTCTAAccc                                                          <  1:370778‑M2/98‑1 (MQ=255)
                                                                                           atcgggcattatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCATCCTTTACCTCGATCATCATGATAACGATCGGTTTGTTGTTGTGTTTTATGACCAAGTAGTTTTTGTGTGTCTAACCCCt                                                        <  2:933547‑M2/100‑1 (MQ=255)
                                                                                              gggcattatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCATCCTTTACCTCGATCATCATGATAACGATCGGTTTGTTGTTGTGTTTTATGACCAAGTAGTTTTTGTGTGTCTAACCCCTGtt                                                     >  1:509979‑M2/49‑151 (MQ=255)
                                                                                              aTCATGTGCGGTGAGAAATTCAATGTGGCGTTGAGATGCTTAAAGGTTCACAACGCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagcta                                                     <  1:896434‑M1/151‑96 (MQ=255)
                                                                                                cATGTGCGGTGAGAAATTCAATGTGGCGTTGAGATGCTTAAAGGTTCACAACGCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctac                                                    <  1:1151193‑M1/150‑97 (MQ=255)
                                                                                                cATGTGCGGTGAGAAATTCAATGTGGCGTTGAGATGCTTAAAGGTTCACAACGCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctac                                                    <  2:1027271‑M1/150‑97 (MQ=255)
                                                                                                 cattatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCATCCTTTACCTCGATCATCATGATAACGATCGGTTTGTTGTTGTGTTTTATGACCAAGTAGTTTTTGTGTGTCTAACCCCTGTTCtt                                                  <  1:817300‑M2/106‑1 (MQ=255)
                                                                                                 cattatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCATCCTTTACCTCGATCATCATGATAACGATCGGTTTGTTGTTGTGTTTTATGACCAAGTAGTTTTTGTGTGTCTAACCCCTGTTCtt                                                  <  2:572026‑M2/106‑1 (MQ=255)
                                                                                                 cattatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCATCCTTTACCTCGATCATCATGATAACGATCGGTTTGTTGTTGTGTTTTATGACCAAGTAGTTTTTGTGTGTCTAACCCCTGTTCtt                                                  <  1:1530075‑M2/106‑1 (MQ=255)
                                                                                                 cattatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCATCCTTTACCTCGATCATCATGATAACGATCGGTTTGTTGTTGTGTTTTATGACCAAGTAGTTTTTGTGTGTCTAACCCCTGTTCtt                                                  <  1:143650‑M2/106‑1 (MQ=255)
                                                                                                 aTGTGCGGTGAGAAATTCAATGTGGCGTTGAGATGCTTAAAGGTTCACAACGCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactg                                                  >  2:794123‑M1/1‑53 (MQ=255)
                                                                                                   gtgCGGTGAGAAATTCAATGTGGCGTTGAGATGCTTAAAGGTTCACAACGCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgac                                                <  2:776548‑M1/151‑101 (MQ=255)
                                                                                                    tatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCATCCTTTACCTCGATCATCATGATAACGATCGGTTTGTTGTTGTGTTTTATGACCAAGTAGTTTTTGTGTGTCTAACCCCTGTTCTTtat                                               >  2:1150074‑M2/43‑151 (MQ=255)
                                                                                                    tatctgaacataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCATCCTTTACCTCGATCATCATGATAACGATCGGTTTGTTGTTGTGTTTTATGACCAAGTAGTTTTTGTGTGTCTAACCCCTGTTCTTta                                                <  1:1193179‑M2/108‑1 (MQ=255)
                                                                                                            cataaaacactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCATCCTTTACCTCGATCATCATGATAACGATCGGTTTGTTGTTGTGTTTTATGACCAAGTAGTTTTTGTGTGTCTAACCCCTGTTCTTTATACAGACGt                                       >  1:690178‑M2/35‑151 (MQ=255)
                                                                                                               aTTCAATGTGGCGTTGAGATGCTTAAAGGTTCACAACGCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgt                                    <  1:165552‑M1/151‑113 (MQ=255)
                                                                                                                 aacactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCATCCTTTACCTCGATCATCATGATAACGATCGGTTTGTTGTTGTGTTTTATGACCAAGTAGTTTTTGTGTGTCTAACCCCTGTTCTTTATACAGACGTTc                                     >  2:1460259‑M2/30‑148 (MQ=255)
                                                                                                                  acactatcaataagttggagtcattaccCACAACGCTACTTTGCTCCATCCTTTACCTCGATCATCATGATAACGATCGGTTTGTTGTTGTGTTTTATGACCAAGTAGTTTTTGTGTGTCTAACCCCTGTTCTTTATACAGACGTTCAGAt                                 <  1:526254‑M2/123‑1 (MQ=255)
                                                                                                                       atcaataagttggagtcattaccCACAACGCTACTTTGCTCCATCCTTTACCTCGATCATCATGATAACGATCGGTTTGTTGTTGTGTTTTATGACCAAGTAGTTTTTGTGTGTCTAACCCCTGTTCTTTATACAGACGTTCAGATAAAg                             <  2:659354‑M2/127‑1 (MQ=255)
                                                                                                                       atcaataagttggagtcattaccCACAACGCTACTTTGCTCCATCCTTTACCTCGATCATCATGATAACGATCGGTTTGTTGTTGTGTTTTATGACCAAGTAGTTTTTGTGTGTCTAACCCCTGTTCTTTATACAGACGTTCAGATAAAGa                            <  2:333823‑M2/128‑1 (MQ=255)
                                                                                                                        ggCGTTGAGATGCTTAAAGGTTCACAACGCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaa                            <  2:394684‑M1/150‑121 (MQ=255)
                                                                                                                            ttGAGATGCTTAAAGGTTCACAACGCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagc                        >  2:435589‑M1/1‑26 (MQ=255)
                                                                                                                             tGAGATGCTTAAAGGTTCACAACGCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcac                      >  1:1386099‑M1/1‑25 (MQ=255)
                                                                                                                             tGAGATGCTTAAAGGTTCACAACGCggtgatgctgccaacttactgatttagggtatgatggcgtttttgagttgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcac                      >  2:501350‑M1/1‑25 (MQ=255)
                                                                                                                                gaTGCTTAAAGGTTCACAACGCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcacc                     <  1:1065806‑M1/149‑128 (MQ=255)
                                                                                                                                 aTGCTTAAAGGTTCACAACGCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgcc                  <  2:1440118‑M1/151‑131 (MQ=255)
                                                                                                                                  tGCTTAAAGGTTCACAACGCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccg                 >  1:487388‑M1/1‑20 (MQ=255)
                                                                                                                                    agtcattaccCACAACGCTACTTTGCTCCATCCTTTACCTCGATCATCATGATAACGATCGGTTTGTTGTTGTGTTTTATGACCAAGTAGTTTTTGTGTGTCTAACCCCTGTTCTTTATACAGACGTTCAGATAAAGACCTTTGCTCATgg               <  2:1378172‑M2/141‑1 (MQ=255)
                                                                                                                                     ttAAAGGTTCACAACGCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggac              >  1:1073817‑M1/1‑17 (MQ=255)
                                                                                                                                       cattaccCACAACGCTACTTTGCTCCATCCTTTACCTCGATCATCATGATAACGATCGGTTTGTTGTTGTGTTTTATGACCAAGTAGTTTTTGTGTGTCTAACCCCTGTTCTTTATACAGACGTTCAGATAAAGACCTTTGCTCATGGAAt            <  1:743205‑M2/144‑1 (MQ=255)
                                                                                                                                        aaGGTTCACAACGCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatc           >  2:1496880‑M1/1‑14 (MQ=255)
                                                                                                                                         ttaccCACAACGCTACTTTGCTCCATCCTTTACCTCGATCATCATGATAACGATCGGTTTGTTGTTGTGTTTTATGACCAAGTAGTTTTTGTGTGTCTAACCCCTGTTCTTTATACAGACGTTCAGATAAAGACCTTTGCTCATGGAATGt          >  2:589662‑M2/6‑151 (MQ=255)
                                                                                                                                         aGGTTCACAACGCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatca          <  1:284422‑M1/151‑139 (MQ=255)
                                                                                                                                           gTTCACAACGCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagc        >  2:1107387‑M1/1‑11 (MQ=255)
                                                                                                                                                caACGCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgactgggtggtgcgtaacggcaaaagcaccgccggacatcagcgctat   >  2:58145‑M1/1‑6 (MQ=255)
                                                                                                                                                caACGCTACTTTGCTCCATCCTTTACCTCGATCATCATGATAACGATCGGTTTGTTGTTGTGTTTTATGACCAAGTAGTTTTTGTGTGTCTAACCCCTGTTCTTTATACAGACGTTCAGATAAAGACCTTTGCTCATGGAATGTCGCAGGt   <  2:810653/151‑1 (MQ=255)
                                                                                                                                                 aaCGCTACTTTGCTCCATCCTTTACCTCGATCATCATGATAACGATCGGTTTGTTGTTGTGTTTTATGACCAAGTAGTTTTTGTGTGTCTAACCCCTGTTCTTTATACAGACGTTCAGATAAAGACCTTTGCTCATGGAATGTCGCAGGTg  >  2:331234/1‑151 (MQ=255)
                                                                                                                                                     |                                                                                                                                                  
TCGATTTTAGGTGATCTTCTCTGTGATATTTCACGTCTTACCAGTAACTGATATGGCTGTCCGCCGCTCGCTTAAAGTGGACTTTTTAGTTTTTATCATGTGCGGTGAGAAATTCAATGTGGCGTTGAGATGCTTAAAGGTTCACAACGCTACTTTGCTCCATCCTTTACCTCGATCATCATGATAACGATCGGTTTGTTGTTGTGTTTTATGACCAAGTAGTTTTTGTGTGTCTAACCCCTGTTCTTTATACAGACGTTCAGATAAAGACCTTTGCTCATGGAATGTCGCAGGTG  >  NC_000913/1199538‑1199833

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.