New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP006584	346068 =	NA (NA)	51 (0.810)	48/588	0.4	96.2%	intergenic (‑51/‑107)	LY180_01675/LY180_01680	CadC family transcriptional regulator/hypothetical protein
	?	CP006584	= 363812	2 (0.030)					intergenic (‑39/‑249)	LY180_01770/LY180_01775	outer membrane phosphoporin protein E/gamma‑glutamyl kinase

ATGTTATGTTTTGTTCTCGCTTTGGTTGGCAGGTTACGGCCAAGTTCGGTAAGAGTGAGAGTTTTACAGTCAAGTAATGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGA‑TTTTTACCAAAATCATTAGGGGATTCATCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP006584/346347‑346068 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCTGAATATTCGCGCGTTAATTAAAATCAGGAATGAAAATGAAAAAGAGCACTCTGGCATTAGTGGTGATGGGCATTGTGGCATCTGCATCCGTACAGGCCGCAGAAATATATAACAAAGACGGTAATAAACTGGATGTCTATGGCAAAGTTAAAGCCATGCATTATATGAGTGATAACGACAGTAAAGATGGCGACCAGAGTTATATCCGTTTTGGTTTTAAAGGCGAAACACAAATTAACGATCAACTGACTGGCTATGGCCGTTGGGAAGCGGAGTTTGCCGGA  <  CP006584/363812‑363525                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ATGTTATGTTTTGTTCTCGCTTTGGTTGGCAGGTTACGGCCAAGTTCGGTAAGAGTGAGAGTTTTACAGTCAAGTAATGCGTGGCAAGCCAACGTTAAGATGTTGATTCGTTTTAAGTGTAATTCGGGTCAGAATGGGTAAAGAGAGTCGTGTAACATATAGAGTTCGCACCTCTTGTTGTCTGATTATTAATTTTTCGCGAAACCCTTTGAACTTATGACAAGATGTGTAACTAACTTCCATTAATGATTTTTTAACAAAA‑AATTAAGGGATGAATCAGCGCGGAATATTCGtcatgt                                                                                                                                                                                                                                                                               >  2:394983/1‑293           tttgtgtgtgtgttGTTGGCGGGTTACGGGCAAGTTGTGTAAGAGTGAGAGGTGTACAGGTAAGTAATGCGTGGGAAGGCAACGTTAAGCTGTTGAGTCGTGTTAAGTGTAATTCGGGGAAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTTATCATATGACAAGATGTGTATCCACCTTAACTTAATGA‑TTTTTACCAAAATCATTAGGGGATTCATCAGCGCTGAATATTCGCGCGTTAATTAAAATC                                                                                                                                                                                                                                                                     <  2:155886/285‑1            TGTTCTCGCTTTGGTTGGCAGGTTACGGCCAAGTTCGGTAAGAGTGAGAGTTTTACAGTCAAGTAATGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGA‑TTTTTACCAAAATCATTAGGGGATTCATCAGCGCTGAATATTCGCGCGTTAATTAAAATCA                                                                                                                                                                                                                                                                    <  1:701595/299‑1              TTCTCGCTTTGGTTGGCAGGTTACGGCCAAGTTCGGTAAGAGTGAGAGTTTTACAGTCAAGTAATGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGGAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATCTGGTTGTCTGATTATTTATTTTTCGCGACACCATTTGATCATATGACAAGATGTGTCTCCACCTTACCTTAATGA‑TTTTTACCAAAATAATTAGGGGATTCATCAGCGCTGAATATTCTCGCGTTAATTAAACTCAGa                                                                                                                                                                                                                                                                  >  2:465956/1‑298                CTCGCTTTGGTTGGCAGGTTACGGCCAAGTTCGGTAAGAGTGAGAGTTTTACAGTCAAGTAATGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGA‑TTTTTACCAAAATCATTAGGGGATTCATCAGCGCTGAATATTCGCGCGTTAATTAAAATCAGGAA                                                                                                                                                                                                                                                                >  1:52910/1‑299                   GCTTTGGTTGGCAGGTTACGGCCAAGTTCGGTAAGAGTGAGAGTTTTACAGTCAAGTAATGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGA‑TTTTTACCAAAATCATTAGGGGATTCATCAGCGCTGAATATTCGCGCGTTAATTAAAATCAGGAATGA                                                                                                                                                                                                                                                             >  1:487284/1‑299                    CTTTGGTTGGCAGGTTACGGCCAAGTTCGGTAAGAGTGAGAGTTTTACAGTCAAGTAATGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGA‑TTTTTACCAAAATCATTAGGGGATTCATCAGCGCTGAATATTCGCGCGTTAATTAAAATCAGGAATGAA                                                                                                                                                                                                                                                            <  1:7343/299‑1                            GGCAGGTTACGGCCAAGTTGGGTAAGAGTGAGAGTTTTACAGTTAAGTAATGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGA‑TTTTTACCAAAATCATTAGGGGATTCATCAGCGCTGAATATTCGCGCGTTAATTAAAATCAGGAATGAAAATGAAAA                                                                                                                                                                                                                                                    <  2:234865/299‑1                                GGTTACGGCCAAGTTCGGTAAGAGTGAGAGTTTTACAGTCAAGTAATGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGA‑TTTTTACCAAAATCATTAGGGGATTCATCAGCGCTGAATATTCGCGCGTTAATTAAAATCAGGAATGAAAATGAAAAAGAG                                                                                                                                                                                                                                                <  1:158077/299‑1                                        CCAAGTTCGGTAAGAGTGAGAGTTTTACAGTCAAGTAATGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGA‑TTTTTACCAAAATCATTAGGGGATTCATCAGCGCTGAATATTCGCGCGTTAATTAAAATCAGGAATGAAAATGAAAAAGAGCACTCTGG                                                                                                                                                                                                                                        >  1:193561/1‑299                                         CAAGTTCGGTAAGAGTGAGAGTTTTACAGTCAAGTAATGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTTATCATATGAAAAGATGTGTATCCACCTTAACTTAATGA‑TTTTTAACAAAATCATAACGGGATTCCTCAGCGACGAATATTCGAGCGTTAATTAAAATCAGGAAAGAAAAAGAAAAAGAGAACTGTGGa                                                                                                                                                                                                                                       >  2:90427/1‑298                                                GGTAAGAGTGAGAGTTTTACAGTCAAGTAATGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGA‑TTTTTACCAAAATCATTAGGGGATTCATCAGCGCTGAATATTCGCGCGTTAATTAAAATCAGGAATGAAAATGAAAAAGAGCACTCTGGCATTAGTG                                                                                                                                                                                                                                <  1:720838/299‑1                                                                    AGTCAAGTAATGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTAGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGA‑TTTTTACCAAAATCATTAGGGGATTCATCAGAGCTGAATATTCGACCGTGAATTAAAATCAGAAATGAAAATGAAAACGAGCACCCGGGCATTAGCGGGGTCGGGCATTTGGGCAct                                                                                                                                                                                                            >  2:292782/1‑297                                                                            AATGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGA‑TTTTTACCAAAATCATTAGGGGATTCATCAGCGCTGAATATTCGCGCGTTAATTAAAATCAGGAATGAAAATGAAAAAGAGCACTCTGGCATTAGTGGTGATGGGCATTGTGGCATCTGCATCCG                                                                                                                                                                                                    >  1:661640/1‑299                                                                               GCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGA‑TTTTTACCAAAATCATTAGGGGATTCATCAGCGCTGAATATTCGCGCGTTAATTAAAATCAGGAATGAAAATGAAAAAGAGCACTCTGGCATTAGTGGTGATGGGCATTGTGGCATCTGCATCCGTAC                                                                                                                                                                                                 <  1:352637/299‑1                                                                                CGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGA‑TTTTTACCAAAATCATTAGGGGATTCATCAGCGCTGAATATTCGCGCGTTAATTAAAATCAGGAATGAAAATGAAAAAGAGCACTCTGGCATTAGTGGTGATGGGCATTGTGGCATCTGCATCCGTACA                                                                                                                                                                                                <  1:465956/299‑1                                                                                                    CTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTCACTTAATGA‑TTTTTACCAAAATCATTAGGGGATTCATCAGCGCTGAATATTCGCGCGTTAATTAAAATCAGGAATGAAAATGAAAAAGAGCACTCTGGCATTAGTGGTGATGGGCATTGTGGCATCTGCATCCGTACAGGCCGCAGAAATATATAACA                                                                                                                                                                            >  2:521406/1‑299                                                                                                                    AGTGTAATTCGGGGAAGAATTGGTAAGAGGAGTCGGATAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGA‑TTTTTACCAAAATCATTAGGGGATTCATCAGCGCTGAATATTCGCGCGTTAATTAAAATCAGGAATGAAAATGAAAAAGAGCACTCTGGCATTAGTGGTGATGGGCATTGTGGCATCTGCATCCGTACAGGCCGCAGAAATATATAACAAAGACGGTAATAAACT                                                                                                                                                            <  2:297064/299‑1                                                                                                                              GGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGA‑TTTTTACCAAAATCATTAGGGGATTCATCAGCGCTGAATATTCGCGCGTTAATTAAAATCAGGAATGAAAATGAAAAAGAGCACTCTGGCATTAGTGGTGATGGGCATTGTGGCATCTGCATCCGTACAGGCCGCAGAAATATATAACAAAGACGGTAATAAACTGGATGTCTAT                                                                                                                                                  >  1:562134/1‑299                                                                                                                              GGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGA‑TTTTTACCAAAATCATTAGGGGATTCATCAGCGCTGAATATTCGCGCGTTAATTAAAATCAGGAATGAAAATGAAAAAGAGCACTCTGGCATTAGTGGTGATGGGCATTGTGGCATCTGCATCCGTACAGGCCGCAGAAATATATAACAAAGACGGTAATAAACTGGATGTCTAT                                                                                                                                                  <  1:597749/299‑1                                                                                                                                 GCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGA‑TTTTTACCAAAATCATTAGGGGATTCATCAGCGCTGAATATTCGCGCGTTAATTAAAATCAGGAATGAAAATGAAAAAGAGCACTCTGGCATTAGTGGTGATGGGCATTGTGGCATCTGCATCCGTCAATGCCGCAGAAATATAAAACAAAGACGGTAATAAACTGGAGGTCACTGGC                                                                                                                                               >  2:58199/1‑299                                                                                                                                    GAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGA‑TTTTTACCAAAATCATTAGGGGATTCATCAGCGCTGAATATTCGCGCGTTAATTAAAATCAGGAATGAAAATGAAAAAGAGCACTCTGGCATTAGTGGTGATGGGCATTGTGGCATCTGCATCCGTACAGGCCGCAGAAATATATAACAAAGACGGTAATAAACTGGATGTCTATGGCAAA                                                                                                                                            >  1:222734/1‑299                                                                                                                                       TTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGA‑TTTTTACCAAAATCATTAGGGGATTCATCAGCGCTGAATATTCGCGCGTTAATTAAAATCAGGAATGAAAATGAAAAAGAGCACTCTGGCATTAGTGGTGATGGGCATTGTGGCATCTGCATCCGTACAGGCCGCAGAAATATATAACAAAGACGGTAATAAACTGGATGTCTATGGCAAAGTT                                                                                                                                         <  1:180749/299‑1                                                                                                                                              AGAGAGTCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGA‑TTTTTACCAAAATCATTAGGGGATTCATCAGCGCTGAATATTCGCGCGTTAATTAAAATCAGGAATGAAAATGAAAAAGAGCACTCTGGCATTAGTGGTGATGGGCATTGTGGCATCTGCATCCGTACAGGCCGCAGAAATATATAACAAAGACGGTAATAAACTGGATGTCTATGGCAAAGTTAAAGCCA                                                                                                                                  >  1:343085/1‑299                                                                                                                                                AGAGTCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGA‑TTTTTACCAAAATCATTAGGGGATTCATCAGCGCTGAATATTCGCGCGTTAATTAAAATCAGGAATGAAAATGAAAAAGAGCACTCTGGCATTAGTGGTGATGGGCATTGTGGCATCTGCATCCGTACAGGCCGCAGAAATATATAACAAAGACGGTAATAAACTGGATGTCTATGGCAAAGTTAAAGCCATG                                                                                                                                >  2:336883/1‑299                                                                                                                                                  AGTCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGA‑TTTTTACCAAAATCATTAGGGGATTCATCAGCGCTGAATATTCGCGCGTTAATTAAAATCAGGAATGAAAATGAAAAAGAGCACTCTGGCATTAGTGGTGATGGGCATTGTGGCATCTGCATCCGTACAGGCCGCAGAAATATATAACAAAGACGGTAATAAACTGGATGTCTATGGCAAAGTTAAAGCCATGCA                                                                                                                              <  1:186636/299‑1                                                                                                                                                    TCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGA‑TTTTTACCAAAATCATTAGGGGATTCATCAGCGCTGAATATTCGCGCGTTAATTAAAATCAGGAATGAAAATGAAAAAGAGCACTCTGGCATTAGTGGTGATGGGCATTGTGGCATCTGCATCCGTACAGGCCGCAGAAATATATAACAAAGACGGTAATAAACTGGATGTCTATGGCAAAGTTAAAGCCATGCATT                                                                                                                            <  1:85658/299‑1                                                                                                                                                       TGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGA‑TTTTTACCAAAATCATTAGGGGATTCATCAGCGCTGAATATTCGCGCGTTAATTAAAATCAGGAATGAAAATGAAAAAGAGCACTCTGGCATTAGTGGTGATGGGCATTGTGGCATCTGCATCCGTACAGGCCGCAGAAATATATAACAAAGACGGTAATAAACTGGATGTCTATGGCAAAGTTAAAGCCATGCATTATA                                                                                                                         <  1:394983/299‑1                                                                                                                                                                       CGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCAGATGACAAGATGTGTATCCACCTTAACTTAATGA‑TTTTTACCAAAATCATTAGGGGATTCATCAGCGCTGAATATTCGCGCGTTAATTAAAATCAGGAATGAAAATGAAAAAGAGCACTCTGGCATTAGTGGTGATGGGCATTGTGGCATCTGCATCCGTACAGGCCGCAGAAATATATAACAAAGACGGTAATAAACTGGATGTCTATGGCAAAGTTAAAGCCATGCATTATATGAGTGATAACGACAG                                                                                                         <  1:249355/299‑1                                                                                                                                                                        GCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGA‑TTTTTACCAAAATCATTAGGGGATTCATCAGCGCTGAATATTCGCGCGTTAATTAAAATCAGGAATGAAAATGAAAAAGAGCACTCTGGCATTAGTGGTGATGGGCATTGTGGCATCTGCATCCGTACAGGCCGCAGAAATATATAACAAAGACGGTAATAAACTGGATGTCTATGGCAAAGTTAAAGCCATGCATTATATGAGTGATAACGACAGT                                                                                                        >  1:208571/1‑299                                                                                                                                                                                   tgtattatttgTGATTGTTCGCGAAACTATGTGATCATATTAAAAGATGTGTATCCAACTTAACTTAATGA‑TTTTTACCAAAATCATTAGGGGATTCATCAGCGCTGAATATTCGCGCGTTAATTAAAATCAGGAATGAAAATGAAAAAGAGCACTCTGGCATTAGGGGTGATGGGCATTGTGGCATCTGCATCCGTACAGGCCGCAGAAATATATAACAAAGACGGTAATAAACTGGATGTCTATGGCAAAGTTAAAGCCATGCATTATATGAGTGATAACGACAGTAAAGATGGCGA                                                                                             <  2:621963/288‑1                                                                                                                                                                                    GTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGA‑TTTTTACCAAAATCATTAGGGGATTCATCAGCGCTGAATATTCGCGCGTTAATTAAAATCAGGAATGAAAATGAAAAAGAGCACTCTGGCATTAGTGGTGATGGGCATTGTGGCATCTGCATCCGTACAGGCCGCAGAAATATATAACAAAGACGGTAATAAACTGGATGTCTATGGCAAAGTTAAAGCCATGCATTATATGAGTGATAACGACAGTAAAGATGGCGAC                                                                                            <  1:481228/299‑1                                                                                                                                                                                                ATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGA‑TTTTTACCAAAATCATTAGGGGATTCATCAGCGCTGAATATTCGCGCGTTAATTAAAATCAGGAATGAAAATGAAAAAGAGCACTCTGGCATTAGTGGTGATGGGCATTGTGGCATCTGCATCCGTACAGGCCGCAGCAATATATAACAAATACGGTAAGAAACTGGATGTCTCTGGCAAAGTTCAACACATTCATTATATGAGTTATAACGTCAGTCAAGATGGCGACCCAAGTGATATC                                                                                >  2:383484/1‑299                                                                                                                                                                                                  TTTTTGTGAAACCATTTGATATAATGACTAGATGTGTATCCACCTTAACTTAATGA‑TTTTTACCAAAATCATTGAGGGATTCATTGGGGGTGAATATTCGCGCGTTAATTAAAATCAGGAATGAAAATGAAAAAGAGCTCTCTGGCATTAGGGGTGATGGGCATTGTGGCATCTGCATCCGTACAGGCCGCAGAAATATATAACAAAGACGGTAATAAACTGGATGTTTATGGCAAAGTTAAAGCCATGCATTATATGAGTGATAACGACAGTAAAGATGGCGACCAGAGTTATATCCG                                                                              <  2:487284/299‑1                                                                                                                                                                                                     TCGCGAAACCAATTGATCATATAACAAGATGTGTATCCACCTTGACTTAATGA‑TTTTTACCAAAATCATTAGGGGATTCATCAGCGCTGAATATTCGCGCGTTAATTAAAATCAGGAATGAAAATGAAAAAGAGCACTCTGGCATTAGTGGTGATGGGCATTGTGGCATCTGCATCCGTACAGGCCGCAGAAATATATAACAAAGACGGTAATAAACTGGATGTCTATGGCAAAGTTAAAGCCATGCATTATATGAGTGATAACGACAGTAAAGATGGCGACCAGAGTTATATCCGTTT                                                                           <  2:159003/299‑1                                                                                                                                                                                                         GAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGA‑TTTTTACCAAAATCATTATGTGATTCATCAGCGCTTAATATTCGCGCGTTAATTAAAATCAGGAATGAAAATGAAAAAGAGCACTCTGGCATTAGTGGTGATGGACATAGTGGCATCTCCAACCGTACAGCCCACAGCAATATATAACAACGACGTAAATAACCTCGATGTCTAAGGCAAAGTTAAAGCCATGCATTATATGAGTGATAAAGACAGGAAAGATGGCAACCAGAGGTTTCTCCTGTTTGGT                                                                       >  2:587487/1‑299                                                                                                                                                                                                         GAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGA‑TTTTTACCAAAATCATTAGGGGATTCATCAGCGCTGAATATTCGCGCGTTAATTAAAATCAGGAATGAAAATGAAAAAGAGCACTCTGGCATTAGTGGTGATGGGCATTGTGGCATCTGCATCCGTACAGGCCGCAGAAATATATAACAAAGACGGTAATAAACTGGATGTCTATGGCAAAGTTAAAGCCATGCATTATATGAGTGATAACGACAGTAAAGATGGCGACCAGAGTTATATCCGTTTTGGT                                                                       >  2:674429/1‑299                                                                                                                                                                                                               ATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGA‑TTTTTACCAAAATCATTAGGGGATTCATCAGCGCTGAATATTCGCGCGTTAATTAAAATCAGGAATGAAAATGAAAAAGAGCACTCTGGCATTAGTGGTGATGGGCATTGTGGCATCTGCATCCGTACAGGCCGCAGAAATATATAACAAAGACGGTAATAAACTGGATGTCTATGGCAAAGTTAAAGCCATGCATTATATGAGTGATAACGACAGTAAAGATGGCGACCAGAGTTATATCCGTTTTGGTTTTAAA                                                                 <  1:498495/299‑1                                                                                                                                                                                                                 tggattagATGACAAGAGGTGTAGTCACATTTACTTAATTA‑TTTTTACCAAAATAATTAGGGGATTCATCAGCGGTGAATATTTGGGCGTTAATTAAAATGAGGAATGAAAATGAAAAAGAGCACTCGGGCATTAGTGGTGATGGGCATTGTGGCATCTGCAGACGTACAGGCCGCAGAAATATATAACAAAGACGGTAATAAACTGGATGTCTATGGCAAAGTTAAAGCCATGCATTATATGAGTGATAACGACAGTAAAGATGGCGACCAGAGTTATATCCGTTTTGGTTTTAAAGG                                                               <  2:449455/291‑1                                                                                                                                                                                                                 TTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGA‑TTTTTACCAAAATCATTAGGGGATTCATCAGCGCTGAATATTCGCGCGTTAATTAAAATCAGGAATGAAAATGAAAAAGAGCACTCTGGCATTAGTGGTGATGGGCATTGTGGCATCTGCATTCGTACAGGCCGCAGAAATATATAACAAAGACGGTAATAAACTGGATGTCTATGGCAAAGTTAAAGCCATGCATTATATGAGTGATAACGACAGTAAAGATGGCGACCAGAGTTATATCCGTTTTGGTTTTAAAGG                                                               >  1:594982/1‑299                                                                                                                                                                                                                      CATATGACAAGATGTGTATCCACCTTAACTTAATGA‑TTTTTACCAAAATCATTAGGGGATTCATCAGCGCTGAATATTCGCGCGTTAATTAAAATCAGGAATGAAAATGAAAAAGAGCACTCTGGCATTAGCGGGGATGGGCATTGTGGCATCTGCATCCGTACAGGCCGCCGAACAATATAATCAACGCGGTAATAAACTGGATGTCTATGGCAAAGTTAAACCCATGCATACAAGTAGTGATCACGACAGTAAAGATGGCCAACAGAGTTAAGACCGTTTTGGATTAAAAGGCGAAA                                                          >  2:717337/1‑299                                                                                                                                                                                                                                    TGTATCCACCTTAACTTAATGA‑TTTTTACCAAAATCATTAGGGGATTCATCAGCGCTGAATATTCGCGCGTTAATTAAAATCAGGAATGAAAATGAAAAAGAGCACTCTGGCATTAGTGGTGATGGGCATTGTGGCATCTGCATCCGTACAGGCCGCAGAAATATATAACAAAGACGGTAATAAACTGGATGTCTATGGCAAAGTTAAAGCCATGCATTATATGAGTGATAACGACAGTAAAGATGGCGACCAGAGTTATATCCGTTTTGGTTTTAAAGGCGAAACACAAATTAACGAT                                            <  1:674429/299‑1                                                                                                                                                                                                                                     GTATCCACCTTAACTTAATGA‑TTTTTACCAAAATCATTAGGGGATTCATCAGCGCTGAATATTCGCGCGTTAATTAAAATCAGGAATGAAAATGAAAAAGAGCACTCTGGCATTAGTGGTGATGGGCATTGTGGCATCTGCATCCGTACAGGCCGCAGAAATATATAACAAAGACGGTAATAAACTGGATGTCTATGGCAAAGTTAAAGCCATGCATTATATGAGTGATAACGACAGTAAAGATGGCGACCAGAGTTATATCCGTTTTGGTTTTAAAGGCGAAACACAAATTAACGATC                                           >  1:347273/1‑299                                                                                                                                                                                                                                         CCACCTTAACTTAATGA‑TTTTTACCAAAATCATTAGGGGATTCATCAGCGCTGAATATTCGCGCGTTAATTAAAATCAGGAATGAAAATGAAAAAGAGCACTCTGGCATTAGTGGTGATGGGCATTGTGGCATCTGCATCCGTACAGGCCGCAGAAATATATAACAAAGACGGTAATAAACTGGATGTCTATGGCAAAGTTAAAGCCATGCATTATATGACTGATAACGACAGTAAAGATGGCGACCAGAAGTAAATCAGTTTTGGTTATAAAGGCGAAAAACAAAGAAAAGAGCAACT                                       >  2:306676/1‑299                                                                                                                                                                                                                                             cgTAACTTAATGT‑TTTGTTACAAAATAATAAGGGGATTATTCAGGTCTGAATATTCGCGCGTGAATTAAAATCAGGAATGAAAATGAAAAAGAGCACTCTGGCATTAGTGGTGATGGGCATTGTGGCATCTGCATCCGTACAGGCCGCAGAAATATATAACAAAGACGTTAATAAACTGTATGTCTATGGCAAAGTTAAAGCCATGCATTATATGAGTGATAACGACAGTAAAGATGGCGACCAGAGTTATATCCGTTTTGGTTTTAAAGGCGAAACACAAATTAACGATCAACTGACT                                   <  2:343085/297‑1                                                                                                                                                                                                                                             CTTAACTTAATGA‑TTTTTACTAAAATCATTAGGGGATTCATCAGCGCTGAATATTCGCGCGTTAATTAAAATCAGGAATGAAAATGAAAAAGAGCACTCTGGCATTCGTGGTGATGGGCATTGTGGCATCTGCATCCGTACAGGCCGCAGAAATATATAACAAAGACGGTACTAAACTGGATGTCTATGGCAAAGTTAAAGCCATGCATTATATGACTGATCACGACAGTAAAGATGGCGACAAGAGTTGTATCCGTTTTGGTTTTAAAGACGAAACACAAATAACCGATCAACTGACT                                   >  2:592988/1‑299                                                                                                                                                                                                                                             CTTAACTTAATGA‑TTTTTACCAAAATCATTAGGGGATTCATCAGCGCTGAATATTCGCGCGTTAATTAAAATCAGGAATGAAAATGAAAAAGAGCACTCTGGCATTAGTGGTGATGGGCATTGTGGCATCTGCATCCGTACAGGCCGCAGAAATATATAACAAAGACGGTAATAAACTGGATGTCTATGGCAAAGTTAAAGCCATGCATTATATGAGTGATAACGACAGTAAAGATGGCGACCAGAGTTATATCCGTTTTGGTTTTAAAGGCGAAACACAAATTAACGATCAACTGACT                                   <  1:587487/299‑1                                                                                                                                                                                                                                              TTAACTTAATGA‑TTTTTACACAAAACATTAGGGGATTTATCAGCGCTGAATATTCGCGCGTTAATTAAAATCAGGAATGAAAATGAAAAAGAGCACTCTGGCATTAGTGGTGATGGGCATTGTGGCATCTGCATCCGTACAGGCCGCAGAAATATATAACAAAGACGGTAATAAACTGGATGTCTATGGCAAAGTTAAAGCCATGCATTATATGAGTGATAACGACAGTAAAGATGGCGACCAGAGTTATATCCGTTTTGGTTTTAAAGGCGAAACACAAATTAACGATCAACTGACTG                                  <  2:208571/299‑1                                                                                                                                                                                                                                                  CTTAATGA‑TTTTTACCAAAATCATTAGGGGATTCATCAGCGCTGAATATTCGCGCGTTAATTAAAATCAGGAATGAAAATGAAAAAGAGCACTCTGGCATTAGTGGTGATGGGCATTGTGGCATCTGCATCCGTACAGGCCGCAGAAATATATAACAAAGACGGTAATAAACTGGATGTCTATGGCAAAGTTAAAGCCATGCATTATATGAGTGATAACGACAGTAAAGATGGCGACCAGAGTTATATCCGTTTTGGTTTTAAAGGCGAAACACAAATTAACGATCAACTGACTGGCTA                              >  1:655566/1‑299                                                                                                                                                                                                                                                                         ATTAGGGGATTCATCAGCGCTGAATATTCGCGCGTTAATTAAAATCAGGAATGAAAATGAAAAAGAGCACTCTGGCATTAGTGGTGATGGGCATTGTGGCATCTGCATCCGTACAGGCCGCAGAAATATATAACAAAGACGGTAATAAACTGGATGTCTATGGCAAAGTTAAAGCCATGCATTATATGAGTGATAACGACAGTAAAGATGGCGACCAGAGTTATATCCGTTTTGGTTTTAAAGGCGAAACACAAATTAACGATCAACTGACTGGCTATGGCCGTTGGGAAGCGGAGTTT        >  1:619399/1‑299                                                                                                                                                                                                                                                                               ggcTTCATCAGCGCTGAATATTCGCGCGTTAATTAAAATCAGGAATGAAAATGAAAAAGAGCACTCTGGCATTAGTGGAGATGGGCATTGTGGCATCTGCATCCGTACAGGCAGCAGAAATATATAACAAAGACGGTAATAAACTGGATGTCTATGGCAAAGTTAAAGCCATGCATTATATGAGTGATAACGACAGTAAACATGACACCCAGAGTTATATCCGTTTTGTGTTTAAAGCGTAAACACAACATAACCATCAACTGACTGACTATGGTCGTGGGGAAGCGGATTCTGACGGA  >  2:86091/4‑299                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ATGTTATGTTTTGTTCTCGCTTTGGTTGGCAGGTTACGGCCAAGTTCGGTAAGAGTGAGAGTTTTACAGTCAAGTAATGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGA‑TTTTTACCAAAATCATTAGGGGATTCATCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP006584/346347‑346068 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCTGAATATTCGCGCGTTAATTAAAATCAGGAATGAAAATGAAAAAGAGCACTCTGGCATTAGTGGTGATGGGCATTGTGGCATCTGCATCCGTACAGGCCGCAGAAATATATAACAAAGACGGTAATAAACTGGATGTCTATGGCAAAGTTAAAGCCATGCATTATATGAGTGATAACGACAGTAAAGATGGCGACCAGAGTTATATCCGTTTTGGTTTTAAAGGCGAAACACAAATTAACGATCAACTGACTGGCTATGGCCGTTGGGAAGCGGAGTTTGCCGGA  <  CP006584/363812‑363525

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.