New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP006584 = 26913030 (1.070)19 (0.720)
+TCATGTCATTAGTGCGTT		 16/550 0.7 57.4% coding (377/414 nt) LY180_01180 hypothetical protein
?CP006584 1594499 = 0 (0.000)coding (168/909 nt) LY180_07575 hypothetical protein

ATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTATTCCTGTTCACGATACCATTGCCAGCGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTGGATGCGTGATTGTCATTCTTCAGATGATAAAGACGTCATTGCAATTGATGGAAAAACGCTCCGGCACTCTTATGACAAGAGTCGCCGCAGGGGAGCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP006584/268920‑269130
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTCAACAATGCATAGTCTGGTCCTCGGACAGATCAAGACGGATGAGAAATCCAATGAGATTACAGCCATTCCTGAACTTCTTAACATGATGGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGCTGCCAGAAAGATATTGCAGAAAAGATACAAAAACAGGGAGGTGATTATTTATTCGCGGTAAAAGGAAACCAGGGGCGGCTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATTCAGAGCATGACAGTTACGCAATGAGTG  >  CP006584/1594499‑1594782
                                                                                                                                                                                                                   ||||||||||||||||||                                                                                                                                                                                                                                                                                            
atgTTTTGAAGTGATATGGTGATTTTGAAAATGGTATTCCTGTTCACGATATCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTGGATGCGTGACTGCCATTCTTCAGATGATAAAGACGTCATTGCAATTGATGGAAAAACGCTCCGGCACTCTTATGACAAGAGTCGTCGCAGGGGAGCGATTCATGTCATTAGTGCGTTCTCAACAATGCATAGTCTGGTCCTCGGACAGATCAAGACGGATGAGAAATCCAATGAGATTACAGCCAT                                                                                                                                                                                                                         >  1:328628/4‑298
        gagtgATATGGGGGTTTTGAAAATTGTATTCCTGTTCACGATATCATTGCCAGAGTTGTATCCTTTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTGGATGCGTGACTGCCATTCTTCAGATGATAAAGACGTCATTGCAATTGATGGAAAAACGCTCCGGCACTCTTATGACAAGAGTCGTCGCAGGGGAGCGATTCATGTCATTAGTGCGTTCTCAACAATGCATAGTCTGGTCCTCGGACAGATCAAGACGGATGAGAAATCCAATGAGATTACAGCCATTCCTGAAC                                                                                                                                                                                                                 <  2:197773/293‑1
              TATGGGGTTTTTGAATATGGTATTCCTTTTCACGATATCATTGCTAGAGTTTTTTCCTGTATTAGTCCTTCAAAATTTCACGAGTGCTTTATTAACTGGATGCGGGACGTCCATTCTTCAGATGATAAAGACGGCATTGCACTTGATGGAAAAACGCTCCGGCACTCTTATGACAAGAGTCGTCGCAGTGTAGCGATTCATGTCATTAGTGCGTTCTCAACAATGCATAGTCTGGTCCTCGGACAGATCAAGACGGATGAGAAATCCAATGAGATTACAGCCATTCCTGAACTTCTTA                                                                                                                                                                                                           <  2:328628/298‑1
                   ctcttccgttttTGGTATTCCTTTTTAGGATATCATTGTCAGATTTTTATCCTTGATCAGTCCTTCAAAATTTTACGATTGCTTTAGTAACTGGATGCGTTACGGCCATTCTTCAGATGATAAAGACGTCATTGCAATGGATGGAAAAACGCTCCGGCACTCTTATGACAAGAGTCGTCGCAGGGGAGCGATTCATGTCATTAGTGCGTTCTCAACAATGCATAGTCTGGTCCTCGGACAGATCAAGACGGATGAGAAATCCAATGAGATTACAGCCATTCCTGAACTTCTTAACATG                                                                                                                                                                                                      <  2:122692/286‑1
                                GGTATTCCTGTTCACGATATCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTGGATGCGTGACTGCCATTCTTCAGATGATAAAGACGTCATTGCAATTGATGGAAAAACGCTCCGGCACTCTTATGACAAGAGTCGTCGCAGGGGAGCGATTCATGTCATTAGTGCGTTCTCAACAATGCATAGTCTGGTCCTCGGACAGATCAAGACGGATGAGAAATCCAATGAGATTACAGCCATTCCTGAACTTCTTAACATGAagatcggaagag                                                                                                                                                                                         >  1:122692/1‑286
                                       CTGTTCACGATATCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTGGATGCGTGACTGCCATTCTTCAGATGATAAAGACGTCATTGCAATTGATGGAAAAACGCTCCGGCACTATTATGCCAAGAGTCGTCGCAGGGGAGCGATTCATGTCATTATTGCGTCCTCAACAATTCCTAGTCTGGTCCTCGGCAACATCAAGACGGATGAGCAATCTAATGAGATTACAGCCCTTCCATAACTCCTAAACAAGAAGAATATTAAAGGAAAAAT                                                                                                                                                                                  >  2:25837/1‑298
                                          TTCACGATATCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTGGATGCGTGACTGCCATTCTTCAGATGATAAAGACGTCATTGCAATTGATGGAAAAACGCTCCGGCACTCTTATGACAAGAGTCGTCGCAGGGGAGCGATTCATGTCATTAGTGCGTTCTCAACAATGCATAGTCTGGTCCTCGGACAGATCAAGACGGATGAGAAATCCAATGAGATTACAGCCATTCCTGAACTTCTTAACATGATGGATATTAAAGGAAAAATCAT                                                                                                                                                                               <  1:37400/298‑1
                                                          cagagttgttgaCTGTATTATTCCTGCAAAATTTCAGGAGTTGTTGATTAACTGGATGCGTGCTTGCAATTCTTCGAATGAGAAAGACGTCATTGCAATTGATGGAAAAACGCTCCGGCACTCTTATGACAAGAGTCGTCGCAGGGGAGCGATTCATGTCATTAGTGCGTTCTCAACAATGCATAGTCTGGTCATCGGACAGATCAAGACGGATGAGAAATCCAATGAGATTAAAGCCATTCCTGAACTTCTTAACATGATGGATATTAAAGGAAAAATCATCACAACTGATGCGATG                                                                                                                                                               <  2:302472/286‑1
                                                          CAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTGGATGCGTGACTGCCATTCTTCAGATGATAAAGACGTCATTGCAATTGATGGAAAAACGCTCCGGCACTCTTATGACAAGAGTCGTCGCAGGGGAGCGATTCATGTCATTAGTGCGTTCTCAACAATGCATAGTCTGGTCCTCGGACAGATCAAGACGGATGAGAAATCCAATGAGATTACAGCCATTCCTGAACTTCTTAACATGATGGATATTAAAGGAAAAATCATCACAACTGATGCGATG                                                                                                                                                               >  1:82327/1‑298
                                                                         TATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTGGATGCGTGACTGCCATTCTTCAGATGATAAAGACGTCATTGCAATTGATGGAAAAACGCTCCGGCACTCTTATGACAAGAGTCGTCGCAGGGGAGCGATTCATGTCATTAGTGCGTTCTCAACAATGCATAGTCTGGTCCTCGGACAGATCAAGACGGATGAGAAATCCAATGAGATTACAGCCATTCCTGAACTTCTTAACATGATGGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGCTGCCAGAAAGAT                                                                                                                                                <  1:25837/298‑1
                                                                                                          TAACTGGATGCGTGACTGCCATTCTTCAGATGATAAAGACGTCATTGCAATTGATGGAAAAACGCTCCGGCACTCTTATGACAAGAGTCGTCGCAGGGGAGCGATTCATGTCATTAGTGCGTTCTCAACAATGCATAGTCTGGTCCTCGGACAGATCAAGACGGATGAGAAATCCAATGAGATTACAGCCATTCCTGAACTTCTTAACATGATGGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGCTGCCAGAAAGATATTGCAGAAAAGATACAAAAACAGGGAGGTGAT                                                                                                               >  1:154939/1‑298
                                                                                                            ACTGGATGCGTGACTGCCATTCTTCAGATGATAAAGACGTCATTGCAATTGATGGAAAAACGCTCCGGCACTCTTATGACAAGAGTCGTCGCAGGGGAGCGATTCATGTCATTAGTGCGTTCTCAACAATGCATAGTCTGGTCCTCGGACAGATCAAGACGGATGAGAAATCCAATGAGATTACAGCCATTCCTGAACTTCTTAACATGATGGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGCTGCCAGAAAGATATTGCAGAAAAGATACAAAAACAGGGAGGTGATTA                                                                                                             <  1:112470/298‑1
                                                                                                                  TGCGTGACTGCCATTCTTCAGATGATAAAGACGTCATTGCAATTGATGGAAAAACGCTCCGGCACTCTTATGACAAGAGTCGTCGCAGGGGAGCGATTCATGTCATTAGTGCGTTCTCAACAATGCATAGTCTGGTCCTCGGACAGATCAAGACGGATGAGAAATCCAATGAGATTACAGCCATTCCTGAACTTCTTAACATGATGGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGCTGCCAGAAAGATATTGCAGAAAAGATACAAAAACAGGGAGGTGATTATTTATT                                                                                                       >  1:280524/1‑298
                                                                                                                         ctgcCATTCTTCAGATGATAAAGACGTCATTGCAATTGATGGAAAAACGCTCCGGCACTCTTATGACAAGAGTCGTCGCAGGGGAGCGATTCATGTCATTAGTGCGTTCTCAACAATGCATAGTCTGGTCCTCGGACAGATCAAGACGGATGAGAAATCCAATGAGATTACAGCCATTCCTGAACTTCTTAACATGATGGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGCTGCCAGAAAGATATTGCAGAAAAGATACAAAAACAGGGAGGTGATTATTTATTCGCGGTA                                                                                                >  1:189597/5‑298
                                                                                                                                      GATGATAAAGACGTGAGTGCAATTGATGGAAAAACTGTCCGGGACGCTTATGGACAGAGTCGTCGCAGGGGAGCGATTCATGTTAGTAGTGAGTTCTCAACAATGCATAGTCTGGGCCTCGTACAGATCAAGACGGATGAGAAATCCAATGAGATTACAGCCATTCCTGAACTTCTTAACATGATGGATATTAAAGGAAAAATCATCACAACTGAGGCGATGGGCTGCCAGAAAGATATTGCAGAAAAGATACAAAAACAGGGAGGTGATTATTTATTCGCGGTAAAAGGAAACCAGG                                                                                   <  2:298367/298‑1
                                                                                                                                                            TTGATGGACAAACGCTCCGGCACTCTTATGACCAGGGGCGTTGCAGGGGAGCGATTCATGTCATTAGTGCGTTCTCAACAATGCATAGTCTGGTCCTCGGACAGATCAAGACGGATGAGAAATCCAATGAGATTACAGCCATTCCTGAACTTCGTAACAGGATGGATATTAAAGGAAAACTCATCACAACTGATGCGATGGGCTGCCAGAAAGATATTGCAGAAAAGATACAAAAACAGGGAGGTGATTATTTATTCGCGGTAAAAGGAAACCAGGGGCGGCTAAATAAAGCCGTTGA                                                             <  2:82327/298‑1
                                                                                                                                                            TTGATGGAAAAACGCTCCGGCACTCTTATGACAAGAGTCGTCGCAGGGGAGCGATTCATGTCATTAGTGCGTTCTCAACAATGCATAGTCTGGTCCTCGGACAGATCAAGACGGATGAGAAATCCAATGAGATTACAGCCATTCCTGAACTTCTTAACATGATGGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGCTGCCAGAAAGATATTGCAGAAAAGATACAAAAACAGGGAGGTGATTATTTATTCGCGGTAAAAGGAAACCAGGGGCGGCTAAATAAAGCCTTTGA                                                             >  1:116331/1‑298
                                                                                                                                                                                   TCTTATGACAAGAGTCGTCGCAGGGGAGCGATTCATGTCATTAGTGCGTTCTCAACAATGCATAGTCTGGTCCTCGGACAGATCAAGACGGATGAGAAATCCAATGAGATTACAGCCATTCCTGAACTTCTTAACATGATGGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGCTGCCAGAAAGATATTGCAGAAAAGATACAAAAACAGGGAGGTGATTATTTATTCGCGGTAAAAGGAAACCAGGGGCGGCTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAAT                                      <  1:89003/298‑1
                                                                                                                                                                                                      GCAGGGGAGCGATTCATGTCATTAGTGCGTTCTCAACAATGCATAGTCTGGTCCTCGGACAGATCAAGACGGATGAGAAATCCAATGAGATTACAGCCATTCCTGAACTTCTTAACATGATGGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGCTGCCAGAAAGATATTGCAGAAAAGATACAAAAACAGGGAGGTGATTATTTATTCGCGGTAAAAGGAAACCAGGGGCGGCTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATTCAGAGCATGA                   >  1:286389/1‑298
                                                                                                                                                                                                                       GTCATTAGTGCGTTCTCAACAATGCATAGTCTGGTCCTCGGACAGATCAAGACGGATGAGAAATCAAATGAGATTACAGCCATTCCTGAACTTCTTAACATGATGGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGCTGCCAGAAAGATATTGCAGAAAAGATACAAAAACAGGGATGTGATTATTTATTCGGGGTAAAAGAAAACAAGGGGCGGCCAAAGAAAACCTTCAGGGAAAAATTTACGCTGAACAAATTAAATAATAAAAAGAATAACAATTACcaaacgagga  >  2:302175/1‑288
                                                                                                                                                                                                                   ||||||||||||||||||                                                                                                                                                                                                                                                                                            
ATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTATTCCTGTTCACGATACCATTGCCAGCGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTGGATGCGTGATTGTCATTCTTCAGATGATAAAGACGTCATTGCAATTGATGGAAAAACGCTCCGGCACTCTTATGACAAGAGTCGCCGCAGGGGAGCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP006584/268920‑269130
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTCAACAATGCATAGTCTGGTCCTCGGACAGATCAAGACGGATGAGAAATCCAATGAGATTACAGCCATTCCTGAACTTCTTAACATGATGGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGCTGCCAGAAAGATATTGCAGAAAAGATACAAAAACAGGGAGGTGATTATTTATTCGCGGTAAAAGGAAACCAGGGGCGGCTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATTCAGAGCATGACAGTTACGCAATGAGTG  >  CP006584/1594499‑1594782

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.