New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP006584 | = 269130 | 30 (1.070) | 19 (0.720) +TCATGTCATTAGTGCGTT |
16/550 | 0.7 | 57.4% | coding (377/414 nt) | LY180_01180 | hypothetical protein |
? | CP006584 | 1594499 = | 0 (0.000) | coding (168/909 nt) | LY180_07575 | hypothetical protein |
TGAAGCTGTTTTTTATTGCTTATACATGATCAAATACTCCTTACATAATTAAGGAGAACAAAATGGAACTTAAAAAATTGATGGAACATATTTCTATTATCCCCGATTACAGACAAGCCTGGAAAGTGGAACATAAATTATCGGATATTCTACTGTTGACTATTTGTGCCGTTATTTCTGGTGCAGAAGGCTGGGAAGATATAGAGGATTTTGGGGAAACACATCCCGACTCAACAATGCATAGTCTGGTCCTCGGACAGATCAAGACGGATGAGAAATCCAATGAGATTACAGCCATTCCTGAACTTCTTAACATGATGGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGCTGCCAGAAAGATATTGCAGAAAAGATACAAAAACAGGGAGGTGATTATTTATTCGCGGTAAAAGGAAACCAGGGGCGGCTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATTCAGAGCATGACAGTTACGCAATGAGTG > CP006584/1594270‑1594782 | atgttttgaagtgatatggtgattttgaaaatggtattcctgttcacgatatcattgccagagttgtatcctgtatcagtcctgcaaaatttcacgagtgctttattaactggatgcgtgactgccattcttcagatgataaagacgtcattgcaattgatggaaaaacgctccggcactcttatgacaagagtcgtcgcaggggagcgattcatgtcattagtgcgttCTCAACAATGCATAGTCTGGTCCTCGGACAGATCAAGACGGATGAGAAATCCAATGAGATTACAGCCAt > 1:328628‑M2/230‑298 (MQ=255) gagtgatatgggggttttgaaaattgtattcctgttcacgatatcattgccagagttgtatcctttatcagtcctgcaaaatttcacgagtgctttattaactggatgcgtgactgccattcttcagatgataaagacgtcattgcaattgatggaaaaacgctccggcactcttatgacaagagtcgtcgcaggggagcgattcatgtcattagtgcgttCTCAACAATGCATAGTCTGGTCCTCGGACAGATCAAGACGGATGAGAAATCCAATGAGATTACAGCCATTCCTGAAc < 2:197773‑M2/77‑1 (MQ=255) tatggggtttttgaatatggtattccttttcacgatatcattgctagagttttttcctgtattagtccttcaaaatttcacgagtgctttattaactggatgcgggacgtccattcttcagatgataaagacggcattgcacttgatggaaaaacgctccggcactcttatgacaagagtcgtcgcagtgtagcgattcatgtcattagtgcgttCTCAACAATGCATAGTCTGGTCCTCGGACAGATCAAGACGGATGAGAAATCCAATGAGATTACAGCCATTCCTGAACTTCTTa < 2:328628‑M2/83‑1 (MQ=255) ctcttccgtttttggtattcctttttaggatatcattgtcagatttttatccttgatcagtccttcaaaattttacgattgctttagtaactggatgcgttacggccattcttcagatgataaagacgtcattgcaatggatggaaaaacgctccggcactcttatgacaagagtcgtcgcaggggagcgattcatgtcattagtgcgttCTCAACAATGCATAGTCTGGTCCTCGGACAGATCAAGACGGATGAGAAATCCAATGAGATTACAGCCATTCCTGAACTTCTTAACatg < 2:122692‑M2/88‑1 (MQ=255) ggtattcctgttcacgatatcattgccagagttgtatcctgtatcagtcctgcaaaatttcacgagtgctttattaactggatgcgtgactgccattcttcagatgataaagacgtcattgcaattgatggaaaaacgctccggcactcttatgacaagagtcgtcgcaggggagcgattcatgtcattagtgcgttCTCAACAATGCATAGTCTGGTCCTCGGACAGATCAAGACGGATGAGAAATCCAATGAGATTACAGCCATTCCTgaacttcttaacatgaagatcggaagag > 1:122692‑M2/198‑286 (MQ=255) ctgttcacgatatcattgccagagttgtatcctgtatcagtcctgcaaaatttcacgagtgctttattaactggatgcgtgactgccattcttcagatgataaagacgtcattgcaattgatggaaaaacgctccggcactattatgccaagagtcgtcgcaggggagcgattcatgtcattattgcgtcCTCAACAATTCCTAGTCTGGTCCTCGGCAACATCAAGACGGATGAGCAATCTAATGAGATTACAGCCCTTCCATAACTCCTAAACAAGAAGAATATTAAAGGAAAAat > 2:25837‑M2/191‑298 (MQ=255) ttcacgatatcattgccagagttgtatcctgtatcagtcctgcaaaatttcacgagtgctttattaactggatgcgtgactgccattcttcagatgataaagacgtcattgcaattgatggaaaaacgctccggcactcttatgacaagagtcgtcgcaggggagcgattcatgtcattagtgcgttCTCAACAATGCATAGTCTGGTCCTCGGACAGATCAAGACGGATGAGAAATCCAATGAGATTACAGCCATTCCTGAACTTCTTAACATGATGGATATTAAAGGAAAAatcat < 1:37400‑M2/111‑1 (MQ=255) cagagttgttgactgtattattcctgcaaaatttcaggagttgttgattaactggatgcgtgcttgcaattcttcgaatgagaaagacgtcattgcaattgatggaaaaacgctccggcactcttatgacaagagtcgtcgcaggggagcgattcatgtcattagtgcgttCTCAACAATGCATAGTCTGGTCATCGGACAGATCAAGACGGATGAGAAATCCAATGAGATTAAAGCCATTCCTGAACTTCTTAACATGATGGATATTAAAGGAAAAATCATCACAACTGATGCGATg < 2:302472‑M2/127‑1 (MQ=255) cagagttgtatcctgtatcagtcctgcaaaatttcacgagtgctttattaactggatgcgtgactgccattcttcagatgataaagacgtcattgcaattgatggaaaaacgctccggcactcttatgacaagagtcgtcgcaggggagcgattcatgtcattagtgcgttCTCAACAATGCATAGTCTGGTCCTCGGACAGATCAAGACGGATGAGAAATCCAATGAGATTACAGCCATTCCTGAACTTCTTAACATGATGGATATTAAAGGAAAAATCATCACAACTGATGCGATg > 1:82327‑M2/172‑298 (MQ=255) tatcagtcctgcaaaatttcacgagtgctttattaactggatgcgtgactgccattcttcagatgataaagacgtcattgcaattgatggaaaaacgctccggcactcttatgacaagagtcgtcgcaggggagcgattcatgtcattagtgcgttCTCAACAATGCATAGTCTGGTCCTCGGACAGATCAAGACGGATGAGAAATCCAATGAGATTACAGCCATTCCTGAACTTCTTAACATGATGGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGCTGCCAGAAAGat < 1:25837‑M2/142‑1 (MQ=255) taactggatgcgtgactgccattcttcagatgataaagacgtcattgcaattgatggaaaaacgctccggcactcttatgacaagagtcgtcgcaggggagcgattcatgtcattagtgcgttCTCAACAATGCATAGTCTGGTCCTCGGACAGATCAAGACGGATGAGAAATCCAATGAGATTACAGCCATTCCTGAACTTCTTAACATGATGGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGCTGCCAGAAAGATATTGCAGAAAAGATACAAAAACAGGGAGGTGat > 1:154939‑M2/124‑298 (MQ=255) actggatgcgtgactgccattcttcagatgataaagacgtcattgcaattgatggaaaaacgctccggcactcttatgacaagagtcgtcgcaggggagcgattcatgtcattagtgcgttCTCAACAATGCATAGTCTGGTCCTCGGACAGATCAAGACGGATGAGAAATCCAATGAGATTACAGCCATTCCTGAACTTCTTAACATGATGGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGCTGCCAGAAAGATATTGCAGAAAAGATACAAAAACAGGGAGGTGatta < 1:112470‑M2/177‑1 (MQ=255) tgcgtgactgccattcttcagatgataaagacgtcattgcaattgatggaaaaacgctccggcactcttatgacaagagtcgtcgcaggggagcgattcatgtcattagtgcgttCTCAACAATGCATAGTCTGGTCCTCGGACAGATCAAGACGGATGAGAAATCCAATGAGATTACAGCCATTCCTGAACTTCTTAACATGATGGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGCTGCCAGAAAGATATTGCAGAAAAGATACAAAAACAGGGAGGTGATtatttatt > 1:280524‑M2/116‑298 (MQ=255) ctgccattcttcagatgataaagacgtcattgcaattgatggaaaaacgctccggcactcttatgacaagagtcgtcgcaggggagcgattcatgtcattagtgcgttCTCAACAATGCATAGTCTGGTCCTCGGACAGATCAAGACGGATGAGAAATCCAATGAGATTACAGCCATTCCTGAACTTCTTAACATGATGGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGCTGCCAGAAAGATATTGCAGAAAAGATACAAAAACAGGGAGGTGATTATTTATTCGCGGTa > 1:189597‑M2/109‑298 (MQ=255) gatgataaagacgtgagtgcaattgatggaaaaactgtccgggacgcttatggacagagtcgtcgcaggggagcgattcatgttagtagtgagttCTCAACAATGCATAGTCTGGGCCTCGTACAGATCAAGACGGATGAGAAATCCAATGAGATTACAGCCATTCCTGAACTTCTTAACATGATGGATATTAAAGGAAAAATCATCACAACTGAGGCGATGGGCTGCCAGAAAGATATTGCAGAAAAGATACAAAAACAGGGAGGTGATTATTTATTCGCGGTAAAAGGAAACCAgg < 2:298367‑M2/203‑1 (MQ=255) ttgatggacaaacgctccggcactcttatgaccaggggcgttgcaggggagcgattcatgtcattagtgcgttCTCAACAATGCATAGTCTGGTCCTCGGACAGATCAAGACGGATGAGAAATCCAATGAGATTACAGCCATTCCTGAACTTCGTAACAGGATGGATATTAAAGGAAAACTCATCACAACTGATGCGATGGGCTGCCAGAAAGATATTGCAGAAAAGATACAAAAACAGGGAGGTGATTATTTATTCGCGGTAAAAGGAAACCAGGGGCGGCTAAATAAAGCCGTTGa < 2:82327‑M2/225‑1 (MQ=255) ttgatggaaaaacgctccggcactcttatgacaagagtcgtcgcaggggagcgattcatgtcattagtgcgttCTCAACAATGCATAGTCTGGTCCTCGGACAGATCAAGACGGATGAGAAATCCAATGAGATTACAGCCATTCCTGAACTTCTTAACATGATGGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGCTGCCAGAAAGATATTGCAGAAAAGATACAAAAACAGGGAGGTGATTATTTATTCGCGGTAAAAGGAAACCAGGGGCGGCTAAATAAAGCCTTTGa > 1:116331‑M2/74‑298 (MQ=255) tcttatgacaagagtcgtcgcaggggagcgattcatgtcattagtgcgttCTCAACAATGCATAGTCTGGTCCTCGGACAGATCAAGACGGATGAGAAATCCAATGAGATTACAGCCATTCCTGAACTTCTTAACATGATGGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGCTGCCAGAAAGATATTGCAGAAAAGATACAAAAACAGGGAGGTGATTATTTATTCGCGGTAAAAGGAAACCAGGGGCGGCTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAAt < 1:89003‑M2/248‑1 (MQ=255) gcaggggagcgattcatgtcattagtgcgttCTCAACAATGCATAGTCTGGTCCTCGGACAGATCAAGACGGATGAGAAATCCAATGAGATTACAGCCATTCCTGAACTTCTTAACATGATGGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGCTGCCAGAAAGATATTGCAGAAAAGATACAAAAACAGGGAGGTGATTATTTATTCGCGGTAAAAGGAAACCAGGGGCGGCTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATTCAGAGCATGa > 1:286389‑M2/32‑298 (MQ=255) gtcattagtgcgttCTCAACAATGCATAGTCTGGTCCTCGGACAGATCAAGACGGATGAGAAATCAAATGAGATTACAGCCATTCCTGAACTTCTTAACATGATGGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGCTGCCAGAAAGATATTGCAGAAAAGATACAAAAACAGGGATGTGATTATTTATTCGGGGTAAAAGAAAACAAGGGGCGGCCAAAGAAAACCTTCAGGGAAAAATTTACGCTGAACAAATTAAATAATAAAAAGAataacaattaccaaacgagga > 2:302175‑M2/15‑288 (MQ=255) | TGAAGCTGTTTTTTATTGCTTATACATGATCAAATACTCCTTACATAATTAAGGAGAACAAAATGGAACTTAAAAAATTGATGGAACATATTTCTATTATCCCCGATTACAGACAAGCCTGGAAAGTGGAACATAAATTATCGGATATTCTACTGTTGACTATTTGTGCCGTTATTTCTGGTGCAGAAGGCTGGGAAGATATAGAGGATTTTGGGGAAACACATCCCGACTCAACAATGCATAGTCTGGTCCTCGGACAGATCAAGACGGATGAGAAATCCAATGAGATTACAGCCATTCCTGAACTTCTTAACATGATGGATATTAAAGGAAAAATCATCACAACTGATGCGATGGGCTGCCAGAAAGATATTGCAGAAAAGATACAAAAACAGGGAGGTGATTATTTATTCGCGGTAAAAGGAAACCAGGGGCGGCTAAATAAAGCCTTTGAGGAAAAATTTCCGCTGAAAGAATTAAATAATTCAGAGCATGACAGTTACGCAATGAGTG > CP006584/1594270‑1594782 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |