mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.1 revision aa8f2595a244
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,120,432 | 1 | . | C | 45.7% | 45.4 / 72.8 | 35 | coding (1123/1395 nt) | wcaJ | colanic biosynthesis UDP‑glucose lipid carrier transferase |
| * | NC_000913 | 566,205 | 0 | T | C | 43.0% | 39.8 / 142.6 | 107 | pseudogene (172/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 566,277 | 0 | C | T | 41.0% | 70.1 / 109.2 | 95 | pseudogene (100/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 566,173 | 0 | C | G | 40.7% | 80.1 / 179.7 | 113 | pseudogene (204/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 566,245 | 0 | G | A | 40.0% | 71.4 / 101.4 | 90 | pseudogene (132/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 4,296,060 | 0 | C | T | 28.8% | 116.7 / 47.8 | 66 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 566,323 | 0 | C | T | 27.8% | 149.6 / 63.2 | 90 | pseudogene (54/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 566,326 | 0 | T | C | 27.8% | 133.0 / 68.6 | 90 | pseudogene (51/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 566,332 | 0 | T | G | 26.9% | 159.5 / 95.9 | 93 | pseudogene (45/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 566,356 | 0 | T | C | 21.5% | 181.6 / 51.3 | 93 | pseudogene (21/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4267359 | 55 (0.920) | 4 (0.070) | 4/216 | 5.3 | 7.0% | coding (246/1194 nt) | tyrB | tyrosine aminotransferase, tyrosine‑repressible, PLP‑dependent |
| ? | NC_000913 | 4267363 = | 54 (0.940) | coding (250/1194 nt) | tyrB | tyrosine aminotransferase, tyrosine‑repressible, PLP‑dependent | |||||
| * | ? | NC_000913 | 1722616 = | 49 (0.820) | 3 (0.060) | 3/202 | 5.6 | 6.5% | coding (496/2013 nt) | ydhK | putative efflux protein (PET) component of YdhJK efflux pump |
| ? | NC_000913 | = 1722612 | 42 (0.780) | coding (492/2013 nt) | ydhK | putative efflux protein (PET) component of YdhJK efflux pump | |||||