mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.1 revision aa8f2595a244
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 958,213 | 0 | C | T | 73.7% | 55.4 / 24.2 | 39 | S187S (AGC→AGT) | serC | 3‑phosphoserine/phosphohydroxythreonine aminotransferase |
| * | NC_000913 | 3,199,343 | 0 | C | T | 70.3% | 42.4 / 29.4 | 37 | R100H (CGC→CAC) | glnE | fused deadenylyltransferase/adenylyltransferase for glutamine synthetase |
| * | NC_000913 | 2,180,588 | 0 | A | G | 60.0% | 12.7 / 17.8 | 20 | K165R (AAA→AGA) | yegU | ADP‑ribosylglycohydrolase family protein |
| * | NC_000913 | 566,245 | 0 | G | A | 51.2% | ‑4.4 / 61.4 | 41 | pseudogene (132/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 566,205 | 0 | T | C | 44.4% | 7.0 / 72.5 | 54 | pseudogene (172/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 566,173 | 0 | C | G | 37.9% | 64.6 / 93.8 | 66 | pseudogene (204/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 380,013 | 0 | G | . | 35.3% | 73.6 / 43.0 | 34 | intergenic (‑132/+56) | frmR/yaiO | regulator protein that represses frmRAB operon/outer membrane protein |
| * | NC_000913 | 566,277 | 0 | C | T | 33.3% | 81.1 / 51.2 | 60 | pseudogene (100/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 19 | 0 | C | A | 25.0% | 66.7 / 14.2 | 28 | intergenic (–/‑171) | –/thrL | –/thr operon leader peptide |
| * | NC_000913 | 141,127 | 0 | C | T | 23.7% | 75.5 / 18.7 | 38 | W33* (TGG→TGA) | gcd | glucose dehydrogenase |
| * | NC_000913 | 566,323 | 0 | C | T | 21.7% | 129.1 / 28.5 | 60 | pseudogene (54/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 3,664,360 | 0 | G | A | 21.4% | 57.2 / 10.3 | 28 | P87S (CCC→TCC) | gadW | transcriptional activator of gadA and gadBC, repressor of gadX |
| * | NC_000913 | 566,326 | 0 | T | C | 21.0% | 118.9 / 33.0 | 62 | pseudogene (51/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 4,296,060 | 0 | C | T | 20.7% | 62.1 / 10.2 | 29 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |