breseq  version 0.32.1  revision aa8f2595a244 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,093,463	0	T	C	71.9%	49.9 / 19.4	32	V196V (GTT→GTC)	ycdT	diguanylate cyclase, membrane‑anchored
*	NC_000913	2,188,038	0	C	.	68.6%	43.6 / 50.9	35	coding (377/1035 nt)	yehA	putative fimbrial‑like adhesin protein
*	NC_000913	566,245	0	G	A	53.1%	‑3.3 / 71.4	49	pseudogene (132/279 nt)	exoD	pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related
*	NC_000913	566,205	0	T	C	52.0%	9.3 / 65.8	50	pseudogene (172/279 nt)	exoD	pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related
*	NC_000913	566,277	0	C	T	47.3%	9.9 / 72.5	55	pseudogene (100/279 nt)	exoD	pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related
*	NC_000913	566,173	0	C	G	45.3%	10.4 / 92.5	53	pseudogene (204/279 nt)	exoD	pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related
*	NC_000913	1,718,641	0	G	A	37.5%	10.7 / 10.6	17	A321V (GCC→GTC)	anmK	anhydro‑N‑acetylmuramic acid kinase
*	NC_000913	2,814,827	0	T	C	37.5%	5.5 / 14.3	16	noncoding (26/78 nt)	micA	sRNA antisense regulator of ompA, lamB, ompX, and phoP, Hfq‑dependent
*	NC_000913	4,296,060	0	C	T	30.9%	65.8 / 31.1	42	intergenic (+266/+376)	gltP/yjcO	glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
*	NC_000913	2,391,193	0	A	G	28.6%	34.0 / 19.8	28	F105L (TTC→CTC)	nuoN	NADH:ubiquinone oxidoreductase, membrane subunit N
*	NC_000913	657,377	0	T	C	22.9%	57.4 / 18.8	35	V29A (GTG→GCG)	cspE	constitutive cold shock family transcription antitermination protein, negative regulator of cspA transcription, RNA melting protein, ssDNA‑binding protein