mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.1 revision aa8f2595a244
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 566,277 | 0 | C | T | 58.0% | 35.4 / 129.7 | 100 | pseudogene (100/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 566,245 | 0 | G | A | 56.6% | 26.5 / 132.9 | 99 | pseudogene (132/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 566,205 | 0 | T | C | 52.3% | 30.8 / 174.4 | 128 | pseudogene (172/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 2,090,380 | 0 | G | A | 51.7% | 9.5 / inf | 209 | M63I (ATG→ATA) | hisG | ATP phosphoribosyltransferase |
| * | NC_000913 | 566,173 | 0 | C | G | 48.6% | 12.2 / 271.4 | 142 | pseudogene (204/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 4,296,060 | 0 | C | T | 33.0% | 135.4 / 76.8 | 91 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 566,332 | 0 | T | G | 29.1% | 128.9 / 97.2 | 86 | pseudogene (45/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 566,326 | 0 | T | C | 28.9% | 115.9 / 75.1 | 92 | pseudogene (51/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 566,323 | 0 | C | T | 28.3% | 149.1 / 64.9 | 93 | pseudogene (54/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 2,077,671 | 0 | G | A | 28.0% | 494.7 / 198.4 | 280 | G35S (GGC→AGC) | cbtA | CP4‑44 prophage, toxin of the YeeV‑YeeU toxin‑antitoxin system |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 71 (0.960) | 16 (0.250) | 12/182 | 3.4 | 21.0% | coding (290/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | 1209619 = | 60 (0.950) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 70 (0.940) | 10 (0.160) | 9/182 | 4.2 | 14.4% | coding (305/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | = 1209602 | 59 (0.940) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | 4226628 = | 72 (0.970) | 3 (0.040) | 3/206 | 7.3 | 4.2% | coding (2801/3684 nt) | metH | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
| ? | NC_000913 | 4226644 = | 69 (0.970) | coding (2817/3684 nt) | metH | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent | |||||
| * | ? | NC_000913 | = 1470047 | NA (NA) | 3 (0.040) | 3/214 | 7.5 | NA | noncoding (752/1221 nt) | IS30 | repeat region |
| ? | NC_000913 | 1470051 = | NA (NA) | noncoding (756/1221 nt) | IS30 | repeat region | |||||
| * | ? | NC_000913 | = 271292 | NA (NA) | 3 (0.040) | 3/214 | 7.5 | 3.4% | noncoding (752/1221 nt) | IS30 | repeat region |
| ? | NC_000913 | 271296 = | 85 (1.140) | noncoding (756/1221 nt) | IS30 | repeat region | |||||