mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.32.1 revision aa8f2595a244
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,087,280 | 1 | . | G | 63.1% | 656.3 / inf | 290 | intergenic (‑166/+49) | yoeI/yeeY | uncharacterized protein/LysR family putative transcriptional regulator |
| * | NC_000913 | 566,173 | 0 | C | G | 53.8% | 38.1 / 182.4 | 104 | pseudogene (204/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 566,205 | 0 | T | C | 48.2% | ‑5.5 / 167.8 | 110 | pseudogene (172/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 566,277 | 0 | C | T | 43.2% | 61.2 / 138.0 | 111 | pseudogene (100/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 566,245 | 0 | G | A | 40.8% | 69.9 / 116.0 | 103 | pseudogene (132/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 566,323 | 0 | C | T | 36.8% | 93.4 / 96.3 | 95 | pseudogene (54/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 566,332 | 0 | T | G | 36.2% | 88.0 / 142.1 | 94 | pseudogene (45/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 4,296,060 | 0 | C | T | 35.4% | 103.5 / 77.0 | 82 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 566,326 | 0 | T | C | 34.7% | 86.9 / 101.7 | 98 | pseudogene (51/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 566,356 | 0 | T | C | 24.1% | 149.7 / 56.6 | 87 | pseudogene (21/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 380,013 | 0 | G | . | 20.2% | 249.8 / 53.0 | 84 | intergenic (‑132/+56) | frmR/yaiO | regulator protein that represses frmRAB operon/outer membrane protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 91 (1.270) | 16 (0.260) | 15/188 | 2.5 | 18.6% | coding (290/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | 1209619 = | 62 (1.010) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 65 (0.900) | 12 (0.200) | 12/188 | 3.1 | 17.3% | coding (305/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | = 1209602 | 59 (0.960) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
| * | ? | NC_000913 | 4097100 = | 65 (0.900) | 3 (0.040) | 3/204 | 6.6 | 4.6% | coding (349/1470 nt) | rhaB | rhamnulokinase |
| ? | NC_000913 | = 4097096 | 63 (0.940) | coding (353/1470 nt) | rhaB | rhamnulokinase | |||||
| * | ? | NC_000913 | = 381730 | NA (NA) | 3 (0.040) | 3/216 | 6.8 | NA | noncoding (471/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381734 = | NA (NA) | noncoding (475/1331 nt) | IS2 | repeat region | |||||