| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6098941 = | 30 (0.710) | 10 (0.260) | 10/248 | 2.8 | 25.7% | coding (204/867 nt) | PP_5350 | RpiR family transcriptional regulator |
| ? | NC_002947 | = 6098934 | 30 (0.770) | coding (211/867 nt) | PP_5350 | RpiR family transcriptional regulator | |||||
GCTGCCGTCATGCACAGCTCCATGGCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6099057‑6098941‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgaagctgGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACGATTCGGTCGCCGACTACAGCCTGAAGATCTTCGACACCACCCTGCACACCCTGATGGAAGTGCGCGAGCACCTTGATCCGCAGGCGCTGCAA < NC_002947/6098934‑6098788 GCTGCCGTCATGCACAGCTCCATGGCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGT < 1:835193/150‑1 ACAGCTCCATGGCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGG < 1:1026120/125‑1 ACAGCTCCATGGCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGG > 2:1026120/1‑125 GCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACGATTCGGTCGCC < 2:462502/150‑1 TCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCCGGATCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACGATTCGGGCGCCGACTACAGCCTGAAGATCTTCGACACCACCC > 2:560801/1‑150 GCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACGATTCGGTCGCCGACTACAGCCTGAAGATCTTCGACACCACCCTGCACACCCTGA > 1:212699/1‑150 CCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACGATTCGGTCGCCGACTACAGCCTGAAGATCTTCGACACCACCCTGCACACCCTGAT < 1:704908/150‑1 TTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACGATTCGGTCGCCGACTACAGCCTGAAGATCTTCGACACCACCCTGCACACCCTGATGGAAGTGC > 1:837410/1‑150 GGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACGATTCGGTCGCCGACTACAGC > 1:572753/1‑88 GGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACGATTCGGTCGCCGACTACAGC < 2:572753/88‑1 CTGGCGCAAAGCCTGGCTGTCGCGGCCAGTTTTGGTCAGTTCTCTATCCACGAAGATTATTCGGTCGCCGACTACAGCCTGAAGATCTTCGACACCACCCTGCACACCCTGATGGAAGTGCGCGAGCACCTTGATCCGCAGGCGCTGCtc < 1:560801/150‑3 GCTGCCGTCATGCACAGCTCCATGGCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6099057‑6098941‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgaagctgGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACGATTCGGTCGCCGACTACAGCCTGAAGATCTTCGACACCACCCTGCACACCCTGATGGAAGTGCGCGAGCACCTTGATCCGCAGGCGCTGCAA < NC_002947/6098934‑6098788 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |