New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6098941 =	30 (0.710)	10 (0.260)	10/248	2.8	25.7%	coding (204/867 nt)	PP_5350	RpiR family transcriptional regulator
	?	NC_002947	= 6098934	30 (0.770)					coding (211/867 nt)	PP_5350	RpiR family transcriptional regulator

CGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGACGGCAGCCGGGTCGAGCAGCACGTGGTCG  >  NC_002947/6098794‑6099079                                                                                                                                                    |                                                                                                                                           gagcagcgcctgcggatcaaggtgctcgcgcacttccatcagggtgtgcagggtggtgtcgaagatcttcaggctgtagtcggcgaccgaataatcttcgtggatagagaactgaccaaaactggccgcgacagccaggctttgcgcCAg                                                                                                                                          <  1:560801‑M1/3‑1 (MQ=255)                   cTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGcc                                                                                                                        >  1:762314/1‑150 (MQ=255)                        gcACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCT‑GAAGCCCggaga                                                                                                                  >  2:543630/1‑146 (MQ=255)                              gcacttccatcagggtgtgcagggtggtgtcgaagatcttcaggctgtagtcggcgaccgaatcgtcttcgtggatggcgaactgaccgaagctggccccggcagccaggctttgcgcCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCaa                                                                                                             >  1:837410‑M1/119‑150 (MQ=255)                                aTCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATg                                                                                                           >  1:442721/1‑150 (MQ=255)                                aTCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATg                                                                                                           >  2:112683/1‑150 (MQ=255)                                aTCAGGGTGTGCAGGGTGGTGTCGAAGATCCTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATg                                                                                                           >  2:1008027/1‑150 (MQ=255)                                      gtgtGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGcttcagcttcag                                                                                                                                    <  2:156541/119‑1 (MQ=255)                                      gtgtGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGcttcagcttcag                                                                                                                                    >  1:156541/1‑119 (MQ=255)                                      atcagggtgtgcagggtggtgtcgaagatcttcaggctgtagtcggcgaccgaatcgtcttcgtggatggcgaactgaccgaagctggccccggcagccaggctttgcgcCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCgg                                                                                                     <  1:704908‑M1/40‑1 (MQ=255)                                       tcagggtgtgcagggtggtgtcgaagatcttcaggctgtagtcggcgaccgaatcgtcttcgtggatggcgaactgaccgaagctggccccggcagccaggctttgcgcCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGc                                                                                                    >  1:212699‑M1/110‑150 (MQ=255)                                                tggtgTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCa                                                                                           <  1:236699/150‑1 (MQ=255)                                                tggtgTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCa                                                                                           >  2:44694/1‑150 (MQ=255)                                                   gggtggtgtcgaagatcttcaggctgtagtcggcgcccgaatcgtcttcgtggatggcgaactgaccgaagctggccccggcagccaggctttgcgcCAGCTTCAGATCCGGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGa                                                                                        >  2:560801‑M1/98‑150 (MQ=255)                                                       gAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGt                                                                                    >  2:401514/1‑150 (MQ=255)                                                              ttCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCa                                                                             >  1:225851/1‑150 (MQ=255)                                                                         gctgtagtcggcgaccgaatcgtcttcgtggatggcgaactgaccgaagctggccccggcagccaggctttgcgcCAGCTTCAGGTcc                                                                                                                                <  2:572753‑M1/13‑1 (MQ=255)                                                                         gctgtagtcggcgaccgaatcgtcttcgtggatggcgaactgaccgaagctggccccggcagccaggctttgcgcCAGCTTCAGGTcc                                                                                                                                >  1:572753‑M1/76‑88 (MQ=255)                                                                         gTCGGCGACCGAATCGTCTCCGTGGATGGCCAACTGACCGAAGCTGGCCCCGGCAGCCATGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCAc                                                                  >  2:802267/1‑150 (MQ=255)                                                                            ggCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCt                                                               >  1:890652/1‑150 (MQ=255)                                                                            ggCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCt                                                               >  1:61358/1‑150 (MQ=255)                                                                                aCCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTgc                                                           <  1:698728/150‑1 (MQ=255)                                                                                  ggcgaccgaatcgtcttcgtggatggcgaactgaccgaagctggccccggcagccaggctttgcgcCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTgcgc                                                         <  2:462502‑M1/84‑1 (MQ=255)                                                                                         tCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCg                                                  >  2:943963/1‑150 (MQ=255)                                                                                         tCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTCTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCg                                                  >  2:1040205/1‑150 (MQ=255)                                                                                           ttCGTGGATGGCGAACTGACCGGAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGc                                                <  1:191025/150‑1 (MQ=255)                                                                                           ttCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGc                                                <  1:1008027/150‑1 (MQ=255)                                                                                           ttCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGc                                                <  1:925109/150‑1 (MQ=255)                                                                                           ttCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGc                                                <  1:401514/150‑1 (MQ=255)                                                                                           ttCGTGGATGGCGAACTGACCGAAGCTGGCACCGGCAGCGAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGACGCACGAGGAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGc                                                >  1:84404/1‑150 (MQ=255)                                                                                                            gACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGa                               <  2:61358/150‑1 (MQ=255)                                                                                                                   accgaagctggccccggcagccaggctttgcgcCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGACGGCAGc                        <  1:835193‑M1/117‑1 (MQ=255)                                                                                                                           cGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGACGGCAGCCGGGTCGa                >  1:767231/1‑150 (MQ=255)                                                                                                                            ggCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGACGGCAGCCGGGTCGag               <  2:767231/150‑1 (MQ=255)                                                                                                                               cccggcagccaggctttgcgcCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCtgt                                     <  1:1026120‑M1/104‑1 (MQ=255)                                                                                                                               cccggcagccaggctttgcgcCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCtgt                                     >  2:1026120‑M1/22‑125 (MQ=255)                                                                                                                                  cAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGATCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGGCGGCAGCCggg                    >  2:642220/1‑139 (MQ=255)                                                                                                                                  cAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGATCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGGCGGCAGCCggg                    <  1:642220/139‑1 (MQ=255)                                                                                                                                  cAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCACCTTAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGACGGCAGCCGGGTCGAGCAGCAc         <  1:802267/150‑1 (MQ=255)                                                                                                                                       tttGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGACGGCAGCCGGGTCGAGCAGCACGTGGt    >  2:990223/1‑150 (MQ=255)                                                                                                                                         tGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCACGGAGCTGTGCATGACGGCAGCCGGGTCGAGCAGCACGTGGTCg  <  2:762314/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                           CGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGACGGCAGCCGGGTCGAGCAGCACGTGGTCG  >  NC_002947/6098794‑6099079

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.