New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 6098941 = | 30 (0.710) | 10 (0.260) | 10/248 | 2.8 | 25.7% | coding (204/867 nt) | PP_5350 | RpiR family transcriptional regulator |
? | NC_002947 | = 6098934 | 30 (0.770) | coding (211/867 nt) | PP_5350 | RpiR family transcriptional regulator |
TTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGACGGCAGCCGGGTCGAGCAGCACGTGGTCG > NC_002947/6098788‑6099079 | gagcaGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATAATCTTCGTGGATAGAGAACTGACCAAAACTGGCCGCGACAGCCAGGCTTTGCGCcag < 1:560801‑M2/148‑4 (MQ=255) cTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGcc > 1:762314/1‑150 (MQ=255) gcACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcccgagcagccaa > 1:837410‑M2/1‑118 (MQ=255) gcACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCT‑GAAGCCCggaga > 2:543630/1‑146 (MQ=255) aTCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcccgagcagccaatggcccgg < 1:704908‑M2/150‑41 (MQ=255) aTCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATg > 1:442721/1‑150 (MQ=255) aTCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATg > 2:112683/1‑150 (MQ=255) aTCAGGGTGTGCAGGGTGGTGTCGAAGATCCTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATg > 2:1008027/1‑150 (MQ=255) tCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcccgagcagccaatggcccggc > 1:212699‑M2/1‑109 (MQ=255) gtgtGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGcttcagcttcag > 1:156541/1‑119 (MQ=255) gtgtGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGcttcagcttcag < 2:156541/119‑1 (MQ=255) gggTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGCCCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcagatccgggaagcccgagcagccaatggcccggcagaaacgcacga > 2:560801‑M2/1‑97 (MQ=255) tggtgTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCa < 1:236699/150‑1 (MQ=255) tggtgTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCa > 2:44694/1‑150 (MQ=255) gAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGt > 2:401514/1‑150 (MQ=255) ttCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCa > 1:225851/1‑150 (MQ=255) gCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcc > 1:572753‑M2/1‑75 (MQ=255) gCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcc < 2:572753‑M2/88‑14 (MQ=255) gTCGGCGACCGAATCGTCTCCGTGGATGGCCAACTGACCGAAGCTGGCCCCGGCAGCCATGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCAc > 2:802267/1‑150 (MQ=255) ggCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcccgagcagccaatggcccggcagaaacgcacgatggtcggctcactgatacccacgctgtgcgc < 2:462502‑M2/150‑85 (MQ=255) ggCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCt > 1:890652/1‑150 (MQ=255) ggCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCt > 1:61358/1‑150 (MQ=255) aCCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTgc < 1:698728/150‑1 (MQ=255) tCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCg > 2:943963/1‑150 (MQ=255) tCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTCTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCg > 2:1040205/1‑150 (MQ=255) ttCGTGGATGGCGAACTGACCGGAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGc < 1:191025/150‑1 (MQ=255) ttCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGc < 1:925109/150‑1 (MQ=255) ttCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGc < 1:401514/150‑1 (MQ=255) ttCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGc < 1:1008027/150‑1 (MQ=255) ttCGTGGATGGCGAACTGACCGAAGCTGGCACCGGCAGCGAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGACGCACGAGGAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGc > 1:84404/1‑150 (MQ=255) gACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGa < 2:61358/150‑1 (MQ=255) aCCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcccgagcagccaatggcccggcagaaacgcacgatggtcggctcactgatacccacgctgtgcgccaaatcggccatggagctgtgcatgacggcagc < 1:835193‑M2/150‑118 (MQ=255) cccGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcccgagcagccaatggcccggcagaaacgcacgatggtcggctcactgatacccacgctgtgcgccaaatcggccatggagctgt < 1:1026120‑M2/125‑105 (MQ=255) cccGGCAGCCAGGCTTTGCGCcagcttcaggtcctggaagcccgagcagccaatggcccggcagaaacgcacgatggtcggctcactgatacccacgctgtgcgccaaatcggccatggagctgt > 2:1026120‑M2/1‑21 (MQ=255) cGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGACGGCAGCCGGGTCGa > 1:767231/1‑150 (MQ=255) ggCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGACGGCAGCCGGGTCGag < 2:767231/150‑1 (MQ=255) cAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGATCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGGCGGCAGCCggg > 2:642220/1‑139 (MQ=255) cAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGATCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGGCGGCAGCCggg < 1:642220/139‑1 (MQ=255) cAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCACCTTAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGACGGCAGCCGGGTCGAGCAGCAc < 1:802267/150‑1 (MQ=255) tttGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGACGGCAGCCGGGTCGAGCAGCACGTGGt > 2:990223/1‑150 (MQ=255) tGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCACGGAGCTGTGCATGACGGCAGCCGGGTCGAGCAGCACGTGGTCg < 2:762314/150‑1 (MQ=255) | TTGCAGCGCCTGCGGATCAAGGTGCTCGCGCACTTCCATCAGGGTGTGCAGGGTGGTGTCGAAGATCTTCAGGCTGTAGTCGGCGACCGAATCGTCTTCGTGGATGGCGAACTGACCGAAGCTGGCCCCGGCAGCCAGGCTTTGCGCCAGCTTCAGCTTCAGGTCCTGGAAGCCCGAGCAGCCAATGGCCCGGCAGAAACGCACGATGGTCGGCTCACTGATACCCACGCTGTGCGCCAAATCGGCCATGGAGCTGTGCATGACGGCAGCCGGGTCGAGCAGCACGTGGTCG > NC_002947/6098788‑6099079 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |