New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5159794 =	20 (0.530)	9 (0.310)	8/208	2.3	42.5%	intergenic (+9/+97)	PP_4542/PP_4543	ABC transporter ATP‑binding protein/permease/hypothetical protein
	?	NC_002947	5159871 =	9 (0.310)					intergenic (+86/+20)	PP_4542/PP_4543	ABC transporter ATP‑binding protein/permease/hypothetical protein

TTCTGCTGCAGGAACGGGAAGGGGTCAAGGGGTATGCCGAAGAGGCGCGGGGGATGTTGCCCTACCGCCGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5159967‑5159794 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaggagcgggtttacccgcgaaaaggccgGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAGGTAATGCCA  >  NC_002947/5159871‑5160013                                                                                                                                                                                                                                                                                                                               TTCTGCTGCAGGAACGGGAAGGGGTCAAGGGGTATGCCGAAGAGGCGCGGGGGATGTTGCCCTACCGCCGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGA                                                                                                                                                                         <  2:665261/150‑1                      GGGTCAAGGGGTATGCCGAAGAGGCGCGGGGGATGTTGCCCTACCGCCGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGG                                                                                                                                                    <  1:843172/150‑1                                     CCGAAGAGGCGCGGGGGATGTTGCCCTACCGCCGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGT                                                                                                                                                                   >  1:275807/1‑120                                     CCGAAGAGGCGCGGGGGATGTTGCCCTACCGCCGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGT                                                                                                                                                                   <  2:275807/120‑1                                             GCGCGGGGGATGTTGCCCTACCGCCGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGC                                                                                                                                                           <  1:324814/120‑1                                             GCGCGGGGGATGTTGCCCTACCGCCGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGC                                                                                                                                                           >  2:324814/1‑120                                                                                                               GGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTC                                                                                                                             <  1:522296/84‑1                                                                                                               GGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTC                                                                                                                             >  2:522296/1‑84                                                                                                                    ACCCGCTCCTACAACGATAGCGAACCTCTGTAGGAGCGGGTTTCCCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCACTTCCCCTTCCTGCA                                                      >  2:298723/1‑150                                                                                                                     CCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAG                                                     >  2:785775/1‑150                                                                                                                      CCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGC                                                    >  1:605859/1‑150                                                                                                                      CCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGC                                                    >  1:228009/1‑150                                                                                                                        GCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGGTCGGCACAGGCAACACAGATCT                                                                                                                              >  1:521826/1‑74                                                                                                                        GCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGGTCGGCACAGGCAACACAGATCT                                                                                                                              <  2:521826/74‑1                                                                                                                                   GATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCA                                       <  2:228009/150‑1                                                                                                                                                     GAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCG                     >  2:807866/1‑150                                                                                                                                                           GTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCA               >  2:781432/1‑150                                                                                                                                                                 CCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAGGT         >  1:713333/1‑150                                                                                                                                                                   GCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAGGTAA       >  1:584249/1‑150                                                                                                                                                                   GCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCA                                                      <  2:303422/103‑1                                                                                                                                                                   GCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCA                                                      >  1:303422/1‑103                                                                                                                                                                    CGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAGGTAAT      <  2:317155/150‑1                                                                                                                                                                     GAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTC                                         <  2:313877/114‑1                                                                                                                                                                     GAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTC                                         >  1:313877/1‑114                                                                                                                                                                        AAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAGGTAATGCCA  <  1:807866/150‑1                                                                                                                                                                                                                                                                                                                               TTCTGCTGCAGGAACGGGAAGGGGTCAAGGGGTATGCCGAAGAGGCGCGGGGGATGTTGCCCTACCGCCGGGACTGAGAGATCTGTGTTGCCTGTGCCGGCCTTTTCGCGGGTAAACCCGCTCCTACAACGATAGCGAACCTGTGTAGGAGCGGGTTTACCCGCGAAAAGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5159967‑5159794 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaggagcgggtttacccgcgaaaaggccgGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAGGTAATGCCA  >  NC_002947/5159871‑5160013

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.