| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5159794 = | 20 (0.530) | 9 (0.310) | 8/208 | 2.3 | 42.5% | intergenic (+9/+97) | PP_4542/PP_4543 | ABC transporter ATP‑binding protein/permease/hypothetical protein |
| ? | NC_002947 | 5159871 = | 9 (0.310) | intergenic (+86/+20) | PP_4542/PP_4543 | ABC transporter ATP‑binding protein/permease/hypothetical protein | |||||
AGGGCTGTATGCCCGGTTGTGGCACCACCAGACC‑GGAGGTTTTGTCGGGGTCGATTGACACCTGCGCGGCCTTTTCGCGGGTAAACCCGCTCCTACACAGGTTCGCTATCGTTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAGGTAATGCCACGACCGC > NC_002947/5159728‑5160020 | aGGGCTGTATGCCCGGTTGTCGAACC‑CCAGGCCAGGTGGTTTTGTCGCGGCCTGTTGACACCTGCGCGTCCTTTTCGCGGGTAAACCCGCTCCTACACAGGTTCGCTATCGTTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAgg < 2:9024/150‑1 (MQ=25) gACC‑GGAGGTTTTGTCGGGGTCGATTGACACCTGCGCGGCCTTTTCGCGGGTCAACCCGCTCCTACACAGGATCGCTATCGTTGTAGGAGCGGGTTCACCCGCGAACAGGCCGGCACAGGCAAACCATCTCTCTCAGTCCCGGCGGTAgg < 2:266788/150‑1 (MQ=37) gTCGATTGACACCTGCGCGGCCTTTTCGCGGGTAAACCCGCTCCTACACAGGTTCGCTATCGTTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCctc > 1:317155/1‑150 (MQ=255) cttGACACCTGCGCGGCCTTTTCGCGGGTAAACGCGCTCCTACACAGGTTCGCTACCGTTGTAGGAGCGGGTTTACCCGCGAAAGGGCGGACACGGGCCACACAGATCTCTCAGTCCCGGCGGTAGGGCAACCTCCCCCGCGCCTCTTCg > 2:628368/2‑150 (MQ=38) ccTGCGCGGCCTTTTCGCGGGTAAACCCGCTCCTACACAGGTTCGCTATCGTTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAg > 1:477730/1‑119 (MQ=255) ccTGCGCGGCCTTTTCGCGGGTAAACCCGCTCCTACACAGGTTCGCTATCGTTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAg < 2:477730/119‑1 (MQ=255) CCTTTTCGCGGGTAAACCCGCTCCTACACAGGTTCGCTATCGTTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGAccc < 1:843172‑M1/150‑1 (MQ=255) GCGGGTAAACCCGCTCCTACACAGGTTCGCTATCGTTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCgcgc < 1:324814‑M1/120‑1 (MQ=255) GCGGGTAAACCCGCTCCTACACAGGTTCGCTATCGTTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCgcgc > 2:324814‑M1/1‑120 (MQ=255) ggtaaacccgctcctacaacgatagcgaacctgtgtaggagcgggtttacccgcgaaaaggccgGCACAGGCAACACAGAtctc > 2:522296‑M2/65‑84 (MQ=255) ggtaaacccgctcctacaacgatagcgaacctgtgtaggagcgggtttacccgcgaaaaggccgGCACAGGCAACACAGAtctc < 1:522296‑M2/20‑1 (MQ=255) acccgctcctacaacgatagcgaacctctgtaggagcgggtttccccgcgaaaaggccgGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCACTTCCCCTTCCTgca > 2:298723‑M2/60‑150 (MQ=255) ACCCGCTCCTACACAGGTTCGCTATCGTTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCgg > 1:275807‑M1/1‑120 (MQ=255) ACCCGCTCCTACACAGGTTCGCTATCGTTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCgg < 2:275807‑M1/120‑1 (MQ=255) cccgctcctacaacgatagcgaacctgtgtaggagcgggtttacccgcgaaaaggccgGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTgcag > 2:785775‑M2/59‑150 (MQ=255) ccgctcctacaacgatagcgaacctgtgtaggagcgggtttacccgcgaaaaggccgGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTgcagc > 1:228009‑M2/58‑150 (MQ=255) ccgctcctacaacgatagcgaacctgtgtaggagcgggtttacccgcgaaaaggccgGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTgcagc > 1:605859‑M2/58‑150 (MQ=255) gctcctacaacgatagcgaacctgtgtaggagcgggtttacccgcgaaaaggtcgGCACAGGCAACACAGAtct < 2:521826‑M2/19‑1 (MQ=255) gctcctacaacgatagcgaacctgtgtaggagcgggtttacccgcgaaaaggtcgGCACAGGCAACACAGAtct > 1:521826‑M2/56‑74 (MQ=255) TCCTACACAGGTTCGCTATCGTTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGaa < 2:665261‑M1/150‑1 (MQ=255) gatagcgaacctgtgtaggagcgggtttacccgcgaaaaggccgGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCa < 2:228009‑M2/106‑1 (MQ=255) ttCGCTATCGTTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGc < 2:173824/104‑1 (MQ=255) ttCGCTATCGTTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGc > 1:173824/1‑104 (MQ=255) cTATCGTTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCAccgccc < 2:843172/150‑1 (MQ=255) gagcgggtttacccgcgaaaaggccgGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCg > 2:807866‑M2/27‑150 (MQ=255) gtttacccgcgaaaaggccgGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTgca > 2:781432‑M2/21‑150 (MQ=255) ccgcgaaaaggccgGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAGGt > 1:713333‑M2/15‑150 (MQ=255) gcgaaaaggccgGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTgca < 2:303422‑M2/91‑1 (MQ=255) gcgaaaaggccgGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTgca > 1:303422‑M2/13‑103 (MQ=255) gcgaaaaggccgGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAGGTaa > 1:584249‑M2/13‑150 (MQ=255) cgaaaaggccgGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAGGTAAt < 2:317155‑M2/139‑1 (MQ=255) gaaaaggccgGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAAtcctc < 2:313877‑M2/104‑1 (MQ=255) gaaaaggccgGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAAtcctc > 1:313877‑M2/11‑114 (MQ=255) aaggccgGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAGGTAATGCCa < 1:807866‑M2/143‑1 (MQ=255) gCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTGTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAGGTAATGCCACGACcgc < 1:298723/150‑1 (MQ=255) | AGGGCTGTATGCCCGGTTGTGGCACCACCAGACC‑GGAGGTTTTGTCGGGGTCGATTGACACCTGCGCGGCCTTTTCGCGGGTAAACCCGCTCCTACACAGGTTCGCTATCGTTGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCACAGGCAACACAGATCTCTCAGTCCCGGCGGTAGGGCAACATCCCCCGCGCCTCTTCGGCATACCCCTTGACCCCTTCCCGTTCCTGCAGCAGAAAATCCTCCACCGCCCGCCGCAACCCCGGGTGCAGCAGGTAATGCCACGACCGC > NC_002947/5159728‑5160020 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |