New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5280943 =	35 (1.050)	6 (0.220)	6/222	2.7	21.6%	intergenic (+28/+110)	trmA/pcaG	tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA/protocatechuate 3,4‑dioxygenase subunit alpha
	?	NC_002947	5281029 =	15 (0.550)					intergenic (+114/+24)	trmA/pcaG	tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA/protocatechuate 3,4‑dioxygenase subunit alpha

GGCGTACCGCTTTGATATCCGCATTCAGGGGGAAGGGGAGACCGTCTTCTTCGACTTCTGAGGTGAAGCTTGGGGCCGCTCTGCGGCCCATTCGCGGGCAAGCCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCCCGCGAATGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5281113‑5280943 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagcgggcttgcccgcgaatgggcCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAGCGGTACGCCGTCTTCCCATCCACTTCGCAACGCTTGGCAATCAAGGTTTCACGCCGCTGCGGCTGC  >  NC_002947/5281029‑5281170                                                                                                                                                                                                                                                                                                                           ccCGTACCGCGTTGATATCCGCATTCAGGGGGAAGGGGAGACCGTCTTCTTCGACTTCTGAGGTGAAGCTTGTGGCCGCTCTGCGGCCCATTCGCGGGCAAGCCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAG                                                                                                                                                                     >  2:401851/3‑150              GATATCCGCATTCAGGGGGAAGGGGAGACCGTCTTCTTCGACTTCTGAGGTGAAGCTTGGGGCCGCTCTGCGGCCCATTCGCGGGCAAGCCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCCCGC                                                                                                                                                        >  1:37361/1‑150                     GCATTCAGGGGGAAGGGGAGACCGTCTTCTTCGACTTCTGAGGTGAAGCTTGGGGCCGCTCTGCGGCCCATTCGCGGGCAAGCCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCCCGCGAATGGG                                                                                                                                                 >  2:442621/1‑150                                                                                                GGGCAAGCCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAA                                                                      >  1:413707/1‑150                                                                                                  GCAAGCCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGGCGTGGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAG                                                                    >  1:87966/1‑150                                                                                                        CCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAA                                                                                                            >  1:6664/1‑104                                                                                                        CCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAA                                                                                                            <  2:6664/104‑1                                                                                                                                          ATCAATGTCGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACG                                                                                                     <  1:29494/77‑1                                                                                                                                          ATCAATGTCGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACG                                                                                                     >  2:29494/1‑77                                                                                                                                                   GGAGCGGGCTTGCCCGCGAATGGGCTGCAAAGCAGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAGCGGTACGCCGTCTTCCCATCCACTTCGCAACGCTTGGCAATCAAGGTTT                   >  1:391228/1‑150                                                                                                                                                          GCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAGCGGTACGCCGTCTTCCCATCCACTTCGCAACGCTTGGCAATCAAGGTTTCACGCCG            >  1:40635/1‑150                                                                                                                                                             TGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAGCGGTACGCCGTCTTCCCATCCACTTCGCAACGCTTGGCAATCAAGGTTTCACGCCGCTG         <  2:589301/150‑1                                                                                                                                                                 CGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAGCGGTACGAAGTATTCCTATCTTCTGCGCGACGCGTGGCAATCAAGGTTTCACGCCGCTGCGGC     >  1:779941/1‑150                                                                                                                                                                 CGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACATGCTCCCCTTCCCCCTGAATGCGGATATCAAAGCGGTACGCCGTCTTCCCATCCACTTCGCAACGCTTGGCAATCAAGGTTTCACGCCGCTGCGGC     >  1:58112/1‑150                                                                                                                                                                    GAATGGGCTGCAAAGCAGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAGCGGTACGCCGTCTTCCCATCCACTTCGCAACGCTTGGCAATCAAGGTTTCACGCCGCTGCGGCTGC  <  2:391228/150‑1                                                                                                                                                                                                                                                                                                                           GGCGTACCGCTTTGATATCCGCATTCAGGGGGAAGGGGAGACCGTCTTCTTCGACTTCTGAGGTGAAGCTTGGGGCCGCTCTGCGGCCCATTCGCGGGCAAGCCCGCTCCTACAACGATCTGCGTACACCGACGCCGATCAATGTCGGAGCGGGCTTGCCCGCGAATGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5281113‑5280943 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagcgggcttgcccgcgaatgggcCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAGCGGTACGCCGTCTTCCCATCCACTTCGCAACGCTTGGCAATCAAGGTTTCACGCCGCTGCGGCTGC  >  NC_002947/5281029‑5281170

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.