New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5280943 =	35 (1.050)	6 (0.220)	6/222	2.7	21.6%	intergenic (+28/+110)	trmA/pcaG	tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA/protocatechuate 3,4‑dioxygenase subunit alpha
	?	NC_002947	5281029 =	15 (0.550)					intergenic (+114/+24)	trmA/pcaG	tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA/protocatechuate 3,4‑dioxygenase subunit alpha

ATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAGCGGTACGCCGTCTTCCCATCCACTTCGCAACGCTTGGCAATCAAGGTTTCACGCCGCTGCGGCTGC  >  NC_002947/5280881‑5281170                                                                                                                                                     |                                                                                                                                              atatGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCg                                                                                                                                              >  2:37361/1‑150 (MQ=255)      gagaGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCagag                                                                                                                                         >  1:23232/1‑150 (MQ=255)               gTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAACCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCaa                                                                                                                                >  2:135045/1‑150 (MQ=255)                      tgGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCAc                                                                                                                         >  2:22544/1‑150 (MQ=255)                                 tGATCGTTGCATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCg                                                                                                              >  2:547406/1‑150 (MQ=255)                                   aTCGTTGTAACGCGGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCAGACATTGATCGGCGTCGGTGTCGGCAGGTCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCgaa                                                                                                            <  1:725313/150‑1 (MQ=38)                                                  gggCTGCTTTGCAGCCCATTCGCGGCCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCATAAGTCGAAGAAGACGGTCTcccc                                                                                             <  1:172276/150‑1 (MQ=255)                                                   ggCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCt                                                                                            >  1:442621/1‑150 (MQ=255)                                                       gctTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTccc                                                                                        <  1:22544/150‑1 (MQ=255)                                                          ttGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAAGGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCt                                                                                     <  2:68045/150‑1 (MQ=255)                                                                CCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGc                                                                               >  2:442621‑M1/1‑150 (MQ=255)                                                                       GCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATc                                                                        >  1:37361‑M1/1‑150 (MQ=255)                                                                         gggcaagcccgctcctacaacgatctgcgtacaccgacgccgatcaatgtcggagcgggcttgcccgcgaatgggcCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCaa                                                                      >  1:413707‑M2/77‑150 (MQ=255)                                                                           gcaagcccgctcctacaacgatctgcgtacaccgacgccgatcaatgtcggagcgggcttgcccgcgaatgggcCGCAGAGCGGCCCCAAGCTTCACCTCAGGCGTGGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAg                                                                    >  1:87966‑M2/75‑150 (MQ=255)                                                                                 ccgctcctacaacgatctgcgtacaccgacgccgatcaatgtcggagcgggcttgcccgcgaatgggcCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCgaa                                                                                                            >  1:6664‑M2/69‑104 (MQ=255)                                                                                 ccgctcctacaacgatctgcgtacaccgacgccgatcaatgtcggagcgggcttgcccgcgaatgggcCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCgaa                                                                                                            <  2:6664‑M2/36‑1 (MQ=255)                                                                                    CTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCACAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAACGCGGTacggg                                                           >  2:401851‑M1/1‑148 (MQ=255)                                                                                              gATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAGCGGTACGCCGTCTTCCCAt                                                 <  1:135045/150‑1 (MQ=255)                                                                                              gATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAGCGGTACGCCGTCTTCCCAt                                                 <  2:23232/150‑1 (MQ=255)                                                                                                   gCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAGCGGTACGCCGTCTTCCCATCCACt                                            >  1:589301/1‑150 (MQ=255)                                                                                                               gCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAGCGGTACGCCGTCTTCCCATCCACTTCGCAACGCTTg                                <  1:547406/150‑1 (MQ=255)                                                                                                                   atcaatgtcggagcgggcttgcccgcgaatgggcCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACg                                                                                                     >  2:29494‑M2/35‑77 (MQ=255)                                                                                                                   atcaatgtcggagcgggcttgcccgcgaatgggcCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACg                                                                                                     <  1:29494‑M2/43‑1 (MQ=255)                                                                                                                       ttGTAGGAGCGAGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCCGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAGCGGTACGCCGTCTTCCCATCCACTTCGCAACGCTTGGCAATCaa                        >  2:379322/1‑150 (MQ=255)                                                                                                                            ggagcgggcttgcccgcgaatgggcTGCAAAGCAGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAGCGGTACGCCGTCTTCCCATCCACTTCGCAACGCTTGGCAATCAAGGttt                   >  1:391228‑M2/26‑150 (MQ=255)                                                                                                                                   gcttgcccgcgaatgggcCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAGCGGTACGCCGTCTTCCCATCCACTTCGCAACGCTTGGCAATCAAGGTTTCAcgccg            >  1:40635‑M2/19‑150 (MQ=255)                                                                                                                                      tgcccgcgaatgggcCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAGCGGTACGCCGTCTTCCCATCCACTTCGCAACGCTTGGCAATCAAGGTTTCACGCCGCTg         <  2:589301‑M2/135‑1 (MQ=255)                                                                                                                                          cgcgaatgggcCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAGCGGTACGAAGTATTCCTATCTTCTGCGCGACGCGTGGCAATCAAGGTTTCACGCCGCTGCGgc     >  1:779941‑M2/12‑150 (MQ=255)                                                                                                                                          cgcgaatgggcCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACATGCTCCCCTTCCCCCTGAATGCGGATATCAAAGCGGTACGCCGTCTTCCCATCCACTTCGCAACGCTTGGCAATCAAGGTTTCACGCCGCTGCGgc     >  1:58112‑M2/12‑150 (MQ=255)                                                                                                                                             gaatgggcTGCAAAGCAGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAGCGGTACGCCGTCTTCCCATCCACTTCGCAACGCTTGGCAATCAAGGTTTCACGCCGCTGCGgctgc  <  2:391228‑M2/142‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                              ATATGGAGAGTGGGGTTCTGCTGGTTCGGCGCTGATCGTTGTATTGCCGGGGCTGCTTTGCAGCCCATTCGCGGGCAAGCCCGCTCCGACATTGATCGGCGTCGGTGTACGCAGATCGTTGTAGGAGCGGGCTTGCCCGCGAATGGGCCGCAGAGCGGCCCCAAGCTTCACCTCAGAAGTCGAAGAAGACGGTCTCCCCTTCCCCCTGAATGCGGATATCAAAGCGGTACGCCGTCTTCCCATCCACTTCGCAACGCTTGGCAATCAAGGTTTCACGCCGCTGCGGCTGC  >  NC_002947/5280881‑5281170

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.